| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1895 |
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| Symbol | |
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| ID | 3966959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2392693 |
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| End bp | 2393325 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920980 |
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| Product | tRNA--hydroxylase |
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| Protein accession | YP_527367 |
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| Protein GI | 90021540 |
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| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4445] Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.00599331 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAAT CTGTTCACGA ATTTCTGTTA TGTGAAACCT CCGAAAGCTG GATTGAATCG
GCTTTAGCGC ACCAAGATTT ACTGTTGCTT GATCACGCCA ATTGCGAAAA AAAGGCAGCG
GGCACGGCAA TGAACTTGAT GTATCGCTAT GTGGATGATT TTGAGCTGCT GAACAAAATG
TCGCGTCTTG CTCGCGAAGA GTTGCGACAC TTTGAGCAGG TAATTGCCAT TATGGAAAAG
CGCGGTATAC CTTACGAGCA AATTACCGCT TCGCGCTATG CCGCCGATTT GCGAAAGCCC
GTGCGCACCC ACGAGCCAGC TCGTCAGATA GATACCTTAA TTGTGGGGGC CATTATCGAG
GCGCGAAGCT GCGAGCGCTT TGAGAAATTG GCACCGCACT TAGATGAGGA GCTGCAAAAG
TTTTACTTGT CGCTACTCAA GTCTGAATCG CGCCATTATC GCGATTACCT CGGCTTAGCT
AAGAAAGCGG CTGGCGATAT GGATATAAGT GAACGCGTGC AGTTTTTCCT CGAGCGCGAA
AAAGCCTTAG TAGAAAGCGA TGATATTGAA TTTCGCTTTC ACTCAGGTGC CACGTTTACC
GCCCCCGAAC CGACTGAAAA TGTTACCCCA TAG
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| Protein sequence | MTKSVHEFLL CETSESWIES ALAHQDLLLL DHANCEKKAA GTAMNLMYRY VDDFELLNKM
SRLAREELRH FEQVIAIMEK RGIPYEQITA SRYAADLRKP VRTHEPARQI DTLIVGAIIE
ARSCERFEKL APHLDEELQK FYLSLLKSES RHYRDYLGLA KKAAGDMDIS ERVQFFLERE
KALVESDDIE FRFHSGATFT APEPTENVTP
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