| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1875 |
|---|
| Symbol | |
|---|
| ID | 3966918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2365617 |
|---|
| End bp | 2366909 |
|---|
| Gene Length | 1293 bp |
|---|
| Protein Length | 430 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920958 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_527347 |
|---|
| Protein GI | 90021520 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG4553] Poly-beta-hydroxyalkanoate depolymerase |
|---|
| TIGRFAM ID | [TIGR01849] polyhydroxyalkanoate depolymerase, intracellular |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000000000304391 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTATATC ACGCGTACGA GCTAAATCAT GCAGCCTTAG CGCCTTGGCG TGAACTTGCT
GGCTTTCAAA AGCGTTTGTT CCAATCCAGT TACAATCCTC TTGCTGATAC TTTTTACGGG
CGCAACATGG TTGCCTCCTG TGAGTTGTTC GAATCCCTTA CTCGCCGATA CGGTAAACCC
GAATGGGGCA TTACAGAGAC TGTCGTAAAT GGCGCGCCGG TGACGGTTTC TGAATCTATC
GTGTGGAAAA AACCATTTTG TAGGTTAGTG CACTTTAAGC GAGATGCAGA AGATTTAAAA
AATGCGCGCT CAGAGACGCG TGTAGACCCT AGGGTATTAC TTGTTGCGCC GCTTTCTGGC
CACTATGCAA CATTGTTACG CAGCACCGTT GAAGCGTTTT TACCCGATCA CGAAGTGTAT
GTGACCGACT GGGAAGATGC TCGCAATGTG CCTATCGCTC GTGGCGAATT TAACCTTCAC
ACTTATATCG ATTATGTGGC AGAAATTCTC GAGCAAATTG GCGAGGGTAT TCATGTAGTT
GCTATTTGTC AGCCCGGGCC ACCTGTTTTA GCTGCTATTT CGATGATGGC TAAGGCCAAA
AGCAAAAAAA TGCCTGCAAC TATGACCTTT ATGGGTTCGC CAATTGACCC AAGAGAGTCG
CCAACGCTGC CCAATAACTT GGCCCTAGAG CGACCATTTG AGTGGTTCCG AGATAACATG
ATTTACACCG TGCCTTGGCC TCACAAAGGG GTAATGCGCA AAGTGTACCC TGGCTTTTTA
CAGCTAAGTG GGTTTATCTC CATGAACCAA GATAAACACA TATCTGCGCA CAAAGAGTAT
TTTGATCACC TTGTAGAAGG TGATTGCGAT AGCGCACAAA AGCATCGCGA ATTCTACGAC
GAATATTTAT CGGTGCTTGA TCTCTCGGCC GAGTTTTATC TGGATACTAT TCGAGAAGTA
TTCCAAAACC ATAGCTTGCC CAAAGGGGAG TTTATTCATA ACGGAGAGCT CGTCGACCCA
GGCTGCATCA CAGGCGTAGC ACTTATGACG GTCGAGGGGG AAAACGATGA TATCTCTGGC
ATCGGGCAAA CTCAGGCGGC ACATACCCTT TGTAAAAACA TCCCCGAAGA AATGCGTATA
GATTATATTC AGCCGGGAGT GGGGCACTAC GGGGTGTTTA GTGGTCGTCG CTTTAGGACA
GAAATTCAGC CTCGTATTCG TGAGTTTATG CGATCCTATT TCGATGTTAA GAAGGAAAAG
CAATGGCAAA AAGCGCACTC AGACTGGGTT TAA
|
|---|
| Protein sequence | MLYHAYELNH AALAPWRELA GFQKRLFQSS YNPLADTFYG RNMVASCELF ESLTRRYGKP
EWGITETVVN GAPVTVSESI VWKKPFCRLV HFKRDAEDLK NARSETRVDP RVLLVAPLSG
HYATLLRSTV EAFLPDHEVY VTDWEDARNV PIARGEFNLH TYIDYVAEIL EQIGEGIHVV
AICQPGPPVL AAISMMAKAK SKKMPATMTF MGSPIDPRES PTLPNNLALE RPFEWFRDNM
IYTVPWPHKG VMRKVYPGFL QLSGFISMNQ DKHISAHKEY FDHLVEGDCD SAQKHREFYD
EYLSVLDLSA EFYLDTIREV FQNHSLPKGE FIHNGELVDP GCITGVALMT VEGENDDISG
IGQTQAAHTL CKNIPEEMRI DYIQPGVGHY GVFSGRRFRT EIQPRIREFM RSYFDVKKEK
QWQKAHSDWV
|
|---|
| |