| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1871 |
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| Symbol | |
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| ID | 3966914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2360769 |
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| End bp | 2362796 |
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| Gene Length | 2028 bp |
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| Protein Length | 675 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920954 |
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| Product | cytochrome C-type biogenesis protein CcmF |
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| Protein accession | YP_527343 |
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| Protein GI | 90021516 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0677969 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCCTG AGTACGGTCA TCTTGCGCTA ATTATGGCGC TATTACTTAG TTTATGTTTA
TCCATAATCC CCATGGCGGG TAGCTACAAC GGTAAGCTGG TGTGGATGGC CTCTGCGCGA
TCTTTATCCA CCGGCATGTT TGTGTTTGTT GCAATCTCAA TAGTGTTGCT TGGCGTTTCG
TTCTATCAGG ACGATTTCAC TGTAGCCTAT GTCGCCAATC ACTCGAATTC ATTGCTGCCT
GTGGTGTACA AAATATGTGC CGTTTGGGGC GGGCACGAGG GTTCAATGCT GCTGTGGGTG
TTAATGCTTG CAGGTTGGAC TTTAGCGGTA ACTATTTTTA GCCGCGAATT ACCGCTAGAT
TTTCAAGCTA GGGTGCTTTC AGTACTCGGC ATGGTGTCGT TTGGCTTTAT TTTGTTTATT
TTGCTCACCT CAAACCCATT TGACCGAATA TTGCCCTTAC CGCCTGTGGA TGGCGCTGAC
TTAAACCCAT TCTTACAAGA CCCCGGCTTT ATCTTCCATC CGCCAATGCT GTATATGGGC
TATGTTGGCT TTGCTGTTAT TTTTGCATTC AGTATTGCGG CATTGCTAAG TGGCCGGTTA
GATAGCGCCT GGGCAAGATG GTGTAGGCCT TGGGGTAATT TGGCGTGGTG CTTTTTAACG
CTGGGTTTAA CACTTGGAAG TTGGTGGGCG TACTACGAGC TAGGTTGGGG TGGCTGGTGG
TTCTGGGACC CAGTTGAAAA CGCAGCCTTT ATGCCTTGGT TGGTGGGTAC CGCATTTATC
CATAATTTGG CGGTGTCGGA AAAGCGTGGG TTATTTAAAA ACTGGACCCT ATTTTTAGCT
ATTTTTGGCT TCTCGCTGAG CTTGTTGGGC ACGTTACTAG TGCGCTCGGG CTTGCTTACA
TCCGTTCATG CTTTTGCCAG TGATCCGTCG CGCGGGGTAT TTATTGGGGC ATTCTTATTT
ATTGTGATTC TTGCCTCGCT CATACTATTT GCTATGCGGG CGCCTCTGGT TAAATCAAAA
ACAGGTTTTG CGCTGCTATC GCGCGATGCG TTTTTATTGC TAAACAGTGT GGTGTTTATT
GTTTCTGCTT CCATTGTATT GCTAGGCACA CTTTACCCTG TAGTGTTGTT GCTACTTGGG
TTGGGCGCTG TGTCGGTGGG CGAGCCATAC TTTAATATCT TTTTCTCTAT ATTAATGAGC
ATTGCCGCCA TAGCTACCGG TATTGGCATG GTGCTTAATT GGAAAAAGAC CGAAGCTAAA
AGAATGCGTG ACTGGGTTAA GTCGCCCGCG TTGTATGCGC TTTGGTTGGG TACCGCATTG
CCGGGCATGA TAGCCGATGA ATATTCTTGG GCTGCGGCGG TTTCTATTGC GCTTGGCAGC
TGGGTTATTT TGTCTTGTTT GTTCGATCTA GTACGTAAAA CCCGCAATGC TGCGAGTGTG
TGGATTGGAA TGGGCAAGCT AACGGCTACG TACTACGGCA TGATTGTGGC GCATATTGGC
TTTGGTATAT GCCTATTGGG TGTGTGTTTA GATACCATTT ACGATGATCA GCGTGATCTA
CGGTTAGAGC TAGGTAAGCC CGCGTTTGCT GGCCACTTAG AGTATGAGCT TGTTGATGTA
AGCCGCGTAA GAGGGCCAAA CTATAATGGC GAGCGAGCCG AAGTTATAGT GCGCAAAGAC
GGCGAGACAA TAAGCATTCT GCACCCAGAA AAGCGCGCTT ATTTTTCTGG TGGCAATATA
ATGAGTGAAG TGGCTATCGA CCCTGGCTTT TTTTACGATA TTTATATTGC GCTGGGGGAA
AAGCTAGACA ATACCTCGTG GAGTATGCGT ATTCACTACA AACCGGTAGT GCGTTGGATA
TGGTTTGGCG CAGTGTTTAT GGCGCTGGGT GGCCTTATAG CTATTACAGA TAAACGCTAC
AAGCGCAAAA AAACTGTTGC TGTAAAAAAT GCAGTGGGTG AAGACGCAAA AGCTGGCGAT
GCCGATGCGA AGCCCATACT TGCCACTGCC AAACAACAAC CCGAGTAA
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| Protein sequence | MLPEYGHLAL IMALLLSLCL SIIPMAGSYN GKLVWMASAR SLSTGMFVFV AISIVLLGVS
FYQDDFTVAY VANHSNSLLP VVYKICAVWG GHEGSMLLWV LMLAGWTLAV TIFSRELPLD
FQARVLSVLG MVSFGFILFI LLTSNPFDRI LPLPPVDGAD LNPFLQDPGF IFHPPMLYMG
YVGFAVIFAF SIAALLSGRL DSAWARWCRP WGNLAWCFLT LGLTLGSWWA YYELGWGGWW
FWDPVENAAF MPWLVGTAFI HNLAVSEKRG LFKNWTLFLA IFGFSLSLLG TLLVRSGLLT
SVHAFASDPS RGVFIGAFLF IVILASLILF AMRAPLVKSK TGFALLSRDA FLLLNSVVFI
VSASIVLLGT LYPVVLLLLG LGAVSVGEPY FNIFFSILMS IAAIATGIGM VLNWKKTEAK
RMRDWVKSPA LYALWLGTAL PGMIADEYSW AAAVSIALGS WVILSCLFDL VRKTRNAASV
WIGMGKLTAT YYGMIVAHIG FGICLLGVCL DTIYDDQRDL RLELGKPAFA GHLEYELVDV
SRVRGPNYNG ERAEVIVRKD GETISILHPE KRAYFSGGNI MSEVAIDPGF FYDIYIALGE
KLDNTSWSMR IHYKPVVRWI WFGAVFMALG GLIAITDKRY KRKKTVAVKN AVGEDAKAGD
ADAKPILATA KQQPE
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