Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1789 |
Symbol | |
ID | 3966715 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2280758 |
End bp | 2281390 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920872 |
Product | TetR family transcriptional regulator |
Protein accession | YP_527261 |
Protein GI | 90021434 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.461504 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGCAAA ACGAGACGGT TGATCGTATT TTGAACGCCG CTACGATTTT ATTTGCCGAA CGAGGCTTCG CGGAGACTTC CCTGCGTACG ATTACTGGCA TGGCAGACGT AAATTTGGCG TCGGTAAATT ACCATTTCGG GTCTAAAAAG GAGCTTATTC AAGCGGTTTT TACTCGGTTT ATGACTCCGT TTTGTAAAGA ACTAGACCGC AGGCTGGATG ACTATGAGCA TGCTGGGCAG CAGTCGCCCA ACCCAGATGT GTTGCTACGG CATCTGTTTG CCGCCTTCAA GGCGGTAACC GAAGAGATTA ACGAGCCACC GCAGCGCTTT ATGAAACTGC TTGGTTTGGC TTATTCCCAA TCGCAAGAGC ATTTAAGGCT AAGTATTATT GAGCAATTTG GCGGTACCTA TACGCGTTTT ACCCACGCGT TAAAAGGCTC CTTGCCCGAA ATGTCGAATG TTACTTTTTA TTGGCGTTTG TATTTTATGC TTGGTGCTGC GGTTTTTACG CTTTCTAGTT ACGATTCTAT TCGCGGCATT TTAAATGCTG ACTACCACGA AGATACCGCT CTCGATGCGG CCATAGAGCT AATGATTCCA TCATTAGTGG GGATGCTAAA TGTTGGAGAC TAA
|
Protein sequence | MAQNETVDRI LNAATILFAE RGFAETSLRT ITGMADVNLA SVNYHFGSKK ELIQAVFTRF MTPFCKELDR RLDDYEHAGQ QSPNPDVLLR HLFAAFKAVT EEINEPPQRF MKLLGLAYSQ SQEHLRLSII EQFGGTYTRF THALKGSLPE MSNVTFYWRL YFMLGAAVFT LSSYDSIRGI LNADYHEDTA LDAAIELMIP SLVGMLNVGD
|
| |