Gene Sde_1752 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1752 
SymbolrlmL 
ID3966560 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2235298 
End bp2237556 
Gene Length2259 bp 
Protein Length752 aa 
Translation table11 
GC content45% 
IMG OID637920835 
Product23S rRNA m(2)G2445 methyltransferase 
Protein accessionYP_527224 
Protein GI90021397 
COG category[L] Replication, recombination and repair
[R] General function prediction only 
COG ID[COG0116] Predicted N6-adenine-specific DNA methylase
[COG1092] Predicted SAM-dependent methyltransferases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.935518 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTACAG AAACAAACCA AAACACAACC CAATACGACC TTTTTGTAAG TTGCTCACAA 
GGGTGGGAAG GCCTGCTGCA AACCGAGCTA GAACAACTAG CCGTAGGCGA CGTTAAACCA
GGCCATGCGG GTGTATATGT AAGCGCTACG TTAGAGCAAA TGTATAAAAT ATGTTTGTGG
ACGCGTCTGG CTACCAAAGT GTTGCTGCCT TTAGATTCTG GCCCAATCGA AACGGGTGAC
GATGTGCACA CCGTTGCCTC TAAAGTTGAC TGGCCAAGCC TAATGAAACC CGGTGCAAGT
TTAAAAGTAG ATTTTATTGG CACTAACGAT GCGGTAAGAA ATACGCAGTT TGGTGCGCAA
CGGGTAAAAG ATGCAGTAGT AGATAGCATT CGCCATGCTG GTGGTGAACG GCCCAATGTA
GAAAAAATGC AACCAGATGT GCGAATACAT GCACGGCTGC ATCGCGACGA ACTGCATATT
AGTATCGATC TTTCTGGCGA TAGTTTGCAT CGTCGTGGGT ATCGCCAAAA ACAGGGCGGT
GCACCGTTAA AAGAAAATCT TGCCGCGGCT TTATTGTTGC GCGCTGGTTG GCCAACAATT
GCAGAGCAGG GTGGTGCACT GCTAGACCCT ATGTGCGGGT CTGGTACGTT GCTAATAGAA
GGCGCGCTTA TTGCGTATAG CATTGCGCCA GGCCTTAGCC GAGATAAGTT CGGTTTTGAA
TGTTGGACGG GGCACAATGC AGATACATGG GCCCAGGTAG TAAACGATGC AAAAGCTATT
CGCGATAAAA ACTTGCAAGA AAAAAGCTTC GATATTTTTG GTTACGACAG CGACTACTAT
GTTACCAAAG CGGCAGAAAT GAACTGCGAA GCGCTAGGCC TGCAAAACGT CATACATATT
GCGAATAAAC CTGTAGAGGA ATTAAAACAA CCCACACATA AAGTATTGGT ACCAGGCTTG
GTTATTGTTA ACCCCCCTTA TGGTGAGCGC TTAGGCGAAG TGAACGAGTT GCGTACAACT
TACCAAATAC TCGCACACCA AGTTAAGCAA CAATTTGAAG GCTGGACATT CGCCGTATTT
ACCAGTAACC CAGAGCTTGC CAAAGAAACC CGTTTGCGAG CCAACAAGAA AAACAAATTT
AAAAACGGAG CATTACCTGC CGAATTGTTT GTTTACAGCG TGTTGTCTGC AGATGATGCC
AAACTGCGTA AAGATAAACT TACTCAAGCA GTACAAACCG ACGAAGATGG GCAAGTAGAA
AACGCAAGTG GGGCGTGGGT GCGCAAAAAC CTTTGCGATA AGCCTTTAAC CGAAGCGGCT
ACTATGGTTG CCAATCGTAT TAAAAAGAAT TTAAAACGAT TAAAGAAAAG TGTGAAGCAA
AATGATTGGC ATGGTTACCG CGTGTACGAT GCCGATATGC CTGAGTATTC CGCCGCGATA
GACCTGTATA ACGATCAGGT GCATATACAA GAATACGCCG CGCCGAAAAC TATCGATGCA
GATAAAGCCG AAGCGCGATT CGAAACCTTA AAACATGGTG CCGCTGTTGC ATTGCAGGCG
CCCGATAACA AACTGTTTGT AAAAACAAGA AAGCGCAACA AAGGCAAAGC TCAATACGAA
AAGCAAACCG ATACTCAAGG GTTTGATGCC GAGCGCTGCA TTCAAGTGCA AGAGGGTAAT
GCAAAACTGT GGGTAAACCT GCAAGATTAT TTAGATACCG GCCTGTTTTT AGATCACCGC
CCGCTGCGCA TGCGTATACA TAAAGAGGCT ACCGGTAAGC GCTTTTTAAA CTTGTTTTGC
TACACCGCCA CTGCCAGCGT GCAGGCGGCA CTGGGTGGCG CAACCGAGTC GGTAAGCGTG
GATATGTCCA ACACCTATTT AGAGTGGGCG GACAACAATT TTAGATTGAA TAATGTACAT
TTAGCGCGAC ACCGTTTGGT GCGAGCAGAT TGCTTTGATT GGTTAAATAA ATGTCGCGAA
GGGTTCGACC TAATAATGTT AGACCCCCCT ACATTTTCTA ACTCGAAAAA AATGAGTGAT
GTGCTCGATA TTCAAAAAGA TCAAGTGCGT TTAATTTCGC GTTGTATGGA TATTTTAAAC
CCCGGTGGTA CCTTGTATTT TTCTACCAAC TTTAGGCAGT TTAAACTAGA TGAACAAATA
AGCACGCGTT ACGTGGTAGA AAACATTTCG GCTGCAACCA TCGATGAAGA CTTTAAGGGC
AACCCTAAAA TCCATTACTG CTGGAAAATA CAACATTAG
 
Protein sequence
MPTETNQNTT QYDLFVSCSQ GWEGLLQTEL EQLAVGDVKP GHAGVYVSAT LEQMYKICLW 
TRLATKVLLP LDSGPIETGD DVHTVASKVD WPSLMKPGAS LKVDFIGTND AVRNTQFGAQ
RVKDAVVDSI RHAGGERPNV EKMQPDVRIH ARLHRDELHI SIDLSGDSLH RRGYRQKQGG
APLKENLAAA LLLRAGWPTI AEQGGALLDP MCGSGTLLIE GALIAYSIAP GLSRDKFGFE
CWTGHNADTW AQVVNDAKAI RDKNLQEKSF DIFGYDSDYY VTKAAEMNCE ALGLQNVIHI
ANKPVEELKQ PTHKVLVPGL VIVNPPYGER LGEVNELRTT YQILAHQVKQ QFEGWTFAVF
TSNPELAKET RLRANKKNKF KNGALPAELF VYSVLSADDA KLRKDKLTQA VQTDEDGQVE
NASGAWVRKN LCDKPLTEAA TMVANRIKKN LKRLKKSVKQ NDWHGYRVYD ADMPEYSAAI
DLYNDQVHIQ EYAAPKTIDA DKAEARFETL KHGAAVALQA PDNKLFVKTR KRNKGKAQYE
KQTDTQGFDA ERCIQVQEGN AKLWVNLQDY LDTGLFLDHR PLRMRIHKEA TGKRFLNLFC
YTATASVQAA LGGATESVSV DMSNTYLEWA DNNFRLNNVH LARHRLVRAD CFDWLNKCRE
GFDLIMLDPP TFSNSKKMSD VLDIQKDQVR LISRCMDILN PGGTLYFSTN FRQFKLDEQI
STRYVVENIS AATIDEDFKG NPKIHYCWKI QH