Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1752 |
Symbol | rlmL |
ID | 3966560 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2235298 |
End bp | 2237556 |
Gene Length | 2259 bp |
Protein Length | 752 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920835 |
Product | 23S rRNA m(2)G2445 methyltransferase |
Protein accession | YP_527224 |
Protein GI | 90021397 |
COG category | [L] Replication, recombination and repair [R] General function prediction only |
COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase [COG1092] Predicted SAM-dependent methyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.935518 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTACAG AAACAAACCA AAACACAACC CAATACGACC TTTTTGTAAG TTGCTCACAA GGGTGGGAAG GCCTGCTGCA AACCGAGCTA GAACAACTAG CCGTAGGCGA CGTTAAACCA GGCCATGCGG GTGTATATGT AAGCGCTACG TTAGAGCAAA TGTATAAAAT ATGTTTGTGG ACGCGTCTGG CTACCAAAGT GTTGCTGCCT TTAGATTCTG GCCCAATCGA AACGGGTGAC GATGTGCACA CCGTTGCCTC TAAAGTTGAC TGGCCAAGCC TAATGAAACC CGGTGCAAGT TTAAAAGTAG ATTTTATTGG CACTAACGAT GCGGTAAGAA ATACGCAGTT TGGTGCGCAA CGGGTAAAAG ATGCAGTAGT AGATAGCATT CGCCATGCTG GTGGTGAACG GCCCAATGTA GAAAAAATGC AACCAGATGT GCGAATACAT GCACGGCTGC ATCGCGACGA ACTGCATATT AGTATCGATC TTTCTGGCGA TAGTTTGCAT CGTCGTGGGT ATCGCCAAAA ACAGGGCGGT GCACCGTTAA AAGAAAATCT TGCCGCGGCT TTATTGTTGC GCGCTGGTTG GCCAACAATT GCAGAGCAGG GTGGTGCACT GCTAGACCCT ATGTGCGGGT CTGGTACGTT GCTAATAGAA GGCGCGCTTA TTGCGTATAG CATTGCGCCA GGCCTTAGCC GAGATAAGTT CGGTTTTGAA TGTTGGACGG GGCACAATGC AGATACATGG GCCCAGGTAG TAAACGATGC AAAAGCTATT CGCGATAAAA ACTTGCAAGA AAAAAGCTTC GATATTTTTG GTTACGACAG CGACTACTAT GTTACCAAAG CGGCAGAAAT GAACTGCGAA GCGCTAGGCC TGCAAAACGT CATACATATT GCGAATAAAC CTGTAGAGGA ATTAAAACAA CCCACACATA AAGTATTGGT ACCAGGCTTG GTTATTGTTA ACCCCCCTTA TGGTGAGCGC TTAGGCGAAG TGAACGAGTT GCGTACAACT TACCAAATAC TCGCACACCA AGTTAAGCAA CAATTTGAAG GCTGGACATT CGCCGTATTT ACCAGTAACC CAGAGCTTGC CAAAGAAACC CGTTTGCGAG CCAACAAGAA AAACAAATTT AAAAACGGAG CATTACCTGC CGAATTGTTT GTTTACAGCG TGTTGTCTGC AGATGATGCC AAACTGCGTA AAGATAAACT TACTCAAGCA GTACAAACCG ACGAAGATGG GCAAGTAGAA AACGCAAGTG GGGCGTGGGT GCGCAAAAAC CTTTGCGATA AGCCTTTAAC CGAAGCGGCT ACTATGGTTG CCAATCGTAT TAAAAAGAAT TTAAAACGAT TAAAGAAAAG TGTGAAGCAA AATGATTGGC ATGGTTACCG CGTGTACGAT GCCGATATGC CTGAGTATTC CGCCGCGATA GACCTGTATA ACGATCAGGT GCATATACAA GAATACGCCG CGCCGAAAAC TATCGATGCA GATAAAGCCG AAGCGCGATT CGAAACCTTA AAACATGGTG CCGCTGTTGC ATTGCAGGCG CCCGATAACA AACTGTTTGT AAAAACAAGA AAGCGCAACA AAGGCAAAGC TCAATACGAA AAGCAAACCG ATACTCAAGG GTTTGATGCC GAGCGCTGCA TTCAAGTGCA AGAGGGTAAT GCAAAACTGT GGGTAAACCT GCAAGATTAT TTAGATACCG GCCTGTTTTT AGATCACCGC CCGCTGCGCA TGCGTATACA TAAAGAGGCT ACCGGTAAGC GCTTTTTAAA CTTGTTTTGC TACACCGCCA CTGCCAGCGT GCAGGCGGCA CTGGGTGGCG CAACCGAGTC GGTAAGCGTG GATATGTCCA ACACCTATTT AGAGTGGGCG GACAACAATT TTAGATTGAA TAATGTACAT TTAGCGCGAC ACCGTTTGGT GCGAGCAGAT TGCTTTGATT GGTTAAATAA ATGTCGCGAA GGGTTCGACC TAATAATGTT AGACCCCCCT ACATTTTCTA ACTCGAAAAA AATGAGTGAT GTGCTCGATA TTCAAAAAGA TCAAGTGCGT TTAATTTCGC GTTGTATGGA TATTTTAAAC CCCGGTGGTA CCTTGTATTT TTCTACCAAC TTTAGGCAGT TTAAACTAGA TGAACAAATA AGCACGCGTT ACGTGGTAGA AAACATTTCG GCTGCAACCA TCGATGAAGA CTTTAAGGGC AACCCTAAAA TCCATTACTG CTGGAAAATA CAACATTAG
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Protein sequence | MPTETNQNTT QYDLFVSCSQ GWEGLLQTEL EQLAVGDVKP GHAGVYVSAT LEQMYKICLW TRLATKVLLP LDSGPIETGD DVHTVASKVD WPSLMKPGAS LKVDFIGTND AVRNTQFGAQ RVKDAVVDSI RHAGGERPNV EKMQPDVRIH ARLHRDELHI SIDLSGDSLH RRGYRQKQGG APLKENLAAA LLLRAGWPTI AEQGGALLDP MCGSGTLLIE GALIAYSIAP GLSRDKFGFE CWTGHNADTW AQVVNDAKAI RDKNLQEKSF DIFGYDSDYY VTKAAEMNCE ALGLQNVIHI ANKPVEELKQ PTHKVLVPGL VIVNPPYGER LGEVNELRTT YQILAHQVKQ QFEGWTFAVF TSNPELAKET RLRANKKNKF KNGALPAELF VYSVLSADDA KLRKDKLTQA VQTDEDGQVE NASGAWVRKN LCDKPLTEAA TMVANRIKKN LKRLKKSVKQ NDWHGYRVYD ADMPEYSAAI DLYNDQVHIQ EYAAPKTIDA DKAEARFETL KHGAAVALQA PDNKLFVKTR KRNKGKAQYE KQTDTQGFDA ERCIQVQEGN AKLWVNLQDY LDTGLFLDHR PLRMRIHKEA TGKRFLNLFC YTATASVQAA LGGATESVSV DMSNTYLEWA DNNFRLNNVH LARHRLVRAD CFDWLNKCRE GFDLIMLDPP TFSNSKKMSD VLDIQKDQVR LISRCMDILN PGGTLYFSTN FRQFKLDEQI STRYVVENIS AATIDEDFKG NPKIHYCWKI QH
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