Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1651 |
Symbol | |
ID | 3965167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2119485 |
End bp | 2120129 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637920732 |
Product | ribosomal large subunit pseudouridine synthase A |
Protein accession | YP_527123 |
Protein GI | 90021296 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 52 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACCA ACCTAGCACC GGCTCAATTC GAATTACTGC ATTGCGACGA AGATATAGTT GTAGTGAATA AGCCTACCGA CCTGCTCTCT GTGCCTGGGC TTGCATCGCC ACAGAACCTA TTTGATAGGG TAAAAGCGCA GTTTCCTACA GCGTTAGTGG TGCACCGTTT AGATATGGCC ACCTCGGGCT TAATGATTTT TGCCCTAAAT AAACCCGCGC AATCGCACTT AGGTAAACAA TTCGAGCGCC GTACCATAAA AAAAATGTAT GTTGCAGTGG TGCATGGGTT AGTTGAGCAG CAATCTGGTG AGATAAGCTC GCCACTTATC TGTGATTGGG AGAACCGCCC CAAACAGAAA GTAGACTGGC TACATGGCAA GCCAGCACTT ACCCAATATA GCGTTGTAGA CCGCAACACA GCCATGCAAG CTACGCGGGT ACACCTATTC CCCCATACGG GTCGATCCCA CCAATTGCGT GTACACATGC AGCAGATTGG CCACCCCATC ATTGGCGACT ACTTTTACGC CCCACAAGAT GCCGACTCGT GTAATTCACG TTTGTTGCTG CATGCCCAAA CACTCAATCT TAGCCACCCT ACCAGTGGCG CAAATATTCA CTTTGACTGC CCCGCACCAT TTTAA
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Protein sequence | MQTNLAPAQF ELLHCDEDIV VVNKPTDLLS VPGLASPQNL FDRVKAQFPT ALVVHRLDMA TSGLMIFALN KPAQSHLGKQ FERRTIKKMY VAVVHGLVEQ QSGEISSPLI CDWENRPKQK VDWLHGKPAL TQYSVVDRNT AMQATRVHLF PHTGRSHQLR VHMQQIGHPI IGDYFYAPQD ADSCNSRLLL HAQTLNLSHP TSGANIHFDC PAPF
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