| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1622 |
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| Symbol | |
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| ID | 3965177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2086468 |
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| End bp | 2087457 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920705 |
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| Product | putative peptidase |
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| Protein accession | YP_527096 |
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| Protein GI | 90021269 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.270373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCTATTTA GAAACAGGCC CAGCACCACA GGCGTAGACC CAAATGATGA GCACCGCGAT
TTTAAGCTTT TAGAGGCGGT GGTTGTAGAT GCGTTTGCAG AGCAAAAAAA GGCGCGTCGT
TGGGGTATAG TATTTAAAAC GCTTACATTC GCGTATTTGT TTGTTGTTTT AATGTTGTTT
GTGGCAGGCG CACAGCAATC GGGGGTGGTG AATGTGACAG AAGATCACAC GGCAGTAGTA
ATGGTGCGCG GTGCTATTGC GGGCGATAAA GAAGCGTCTG CCCCCAGAAT AAATGCGGCG
CTAAGAGCAG CGTTTGAAAA TGAGCATGCA AAAGCTATTG TGCTAGCTGT AAATTCCCCT
GGTGGTAGCC CTGTGCAGTC GGCGTATGTG TACGACGAAA TTATGCGCCT TAAAAAAGAA
TACCCAGATA AAAAAGTGTA TGCGGTAATA GAAGATATTG GCGCCTCGGG TGCGTACTAT
ATTTCTGCTG CCGCGGATGA GATTTATGCC AACCGTTCTA GTTTGGTGGG GTCTATTGGT
GTAATTGCCT CCGGCTTTGG CTTTACTGGC ACCATGGAGA AGCTTGGCGT AGAGCGCAGG
GTATATACCT CCGGCGAAAA TAAAGCGTTT CTCGATCCGT TTTCCCCAGC CAATGAACAG
CATGAAGAGT TTTGGGAAGG CGTGCTCGCA GAAGTGCATG TGCAGTTTAT GGATGCGGTA
AAAGCAGGGC GCGGCGACCG ATTAAAAGAT AATGATACCG TTTTTAGCGG CTTAATATGG
AATGGCGAGC GCGCGTTAGA AATGGGGTTG ATTGATGGCT TGGGCAGTGC TCGCGACGTG
GCGCGAGATG TAATCAAACA TGAAAAACTG GTTGATTACA CCCGCCGTAA ATCGCCATTG
CAAGAATTAA TGAATAGCTT TGGTGTGTCT GTCGGTGAGG GTATTGCCCG CTCCGTTGGT
GTTGATAACT CTATTGCACC TCTGCGTTAA
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| Protein sequence | MLFRNRPSTT GVDPNDEHRD FKLLEAVVVD AFAEQKKARR WGIVFKTLTF AYLFVVLMLF
VAGAQQSGVV NVTEDHTAVV MVRGAIAGDK EASAPRINAA LRAAFENEHA KAIVLAVNSP
GGSPVQSAYV YDEIMRLKKE YPDKKVYAVI EDIGASGAYY ISAAADEIYA NRSSLVGSIG
VIASGFGFTG TMEKLGVERR VYTSGENKAF LDPFSPANEQ HEEFWEGVLA EVHVQFMDAV
KAGRGDRLKD NDTVFSGLIW NGERALEMGL IDGLGSARDV ARDVIKHEKL VDYTRRKSPL
QELMNSFGVS VGEGIARSVG VDNSIAPLR
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