| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1620 |
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| Symbol | |
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| ID | 3965728 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2084805 |
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| End bp | 2085770 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637920703 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_527094 |
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| Protein GI | 90021267 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.27015 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGA ATGTACAGTT TCTCACGGTA AGTGAGGATG AGGCCGGTCA GCGGTTAGAT
AACTATTTAT TAGCTAGGTT AAAAGGGGTG CCTAAATCCC TTATATATAG AGTAATTAGA
AAGGGCGAGG TGCGCGTAAA TAAAGGCCGC GCCAAGCCAG AGCGCAAATT GGCCGGTGGC
GATGTGGTGC GCGTTCCTCC TGTTCGCGTA GCCGAAAGCC CAGAGCCAGT GCCTATTAGC
AAAACCTTAA AAGGTGTATT GGATAACGCC GTTATTGCCG ATGAGCCTGG GTACCTAGTG
GTAAATAAGC CGGCAGGTTT GGCGGTGCAC GGTGGCAGTG GTGTTACTTT GGGGTTGATC
GAGGCGTTGC GTCAGGCTTT TCCACAGTAC TCTTATTTAG AGTTGGTGCA CCGGCTAGAT
AGAGACACTT CCGGCTGCAT CTTGGTGGCC AAAAAACGTT CAATGCTGCG TTATTTGCAA
GAGTTGTTTC GCGGCGAAAA GCGCATCCAT AAGCGCTATC TTGCGTTGGT GATTGGTCGC
TGGCCCTCTA GGCGAAACTT GGTGGATGCA CCTTTGCTTA GAAAAGAGCT GCAGAGCGGC
GAGCGCATTG TGCGAGTAAG CTTGGATGGT AAACCCTCCA AAACCGAGTT TAACGTGGTG
CAGCGTTTTG GCGAGTCCGC CACTTTGGTG GAGGCAAGGC CGATTACAGG TAGAACCCAT
CAAATTCGAG TGCACGCCCA GCACCAAGGG CACCCGCTAG TGGGCGACCC CAAATACGGT
AACGAAGTGT TTGACCTTTC GGTGAAGAAG CTTGGTGTTA ATCGATTGTT TTTGCATGCC
GCGGGACTAA GCTTTAAAAA CGCCGATGGT GAGCAGGTGA ACATAGAAGT CCCACTGCCT
GCCGAGTTGC AAAGTGTAGT TGCTGCTTTT GATGGTCATT TTAATCAAGC AGGCAGTGTT
GAATAG
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| Protein sequence | MAQNVQFLTV SEDEAGQRLD NYLLARLKGV PKSLIYRVIR KGEVRVNKGR AKPERKLAGG
DVVRVPPVRV AESPEPVPIS KTLKGVLDNA VIADEPGYLV VNKPAGLAVH GGSGVTLGLI
EALRQAFPQY SYLELVHRLD RDTSGCILVA KKRSMLRYLQ ELFRGEKRIH KRYLALVIGR
WPSRRNLVDA PLLRKELQSG ERIVRVSLDG KPSKTEFNVV QRFGESATLV EARPITGRTH
QIRVHAQHQG HPLVGDPKYG NEVFDLSVKK LGVNRLFLHA AGLSFKNADG EQVNIEVPLP
AELQSVVAAF DGHFNQAGSV E
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