Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1613 |
Symbol | |
ID | 3965720 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2074704 |
End bp | 2075522 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637920695 |
Product | glutamate racemase |
Protein accession | YP_527087 |
Protein GI | 90021260 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0796] Glutamate racemase |
TIGRFAM ID | [TIGR00067] glutamate racemase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.572761 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.655413 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGAAT CACCCCGCCA GCCTGACCCC AACACACCTA CAGTGCTTGT ATTTGATTCT GGCGCCGGAG GGCTAAGTAT CTGCACCAAA ATTATGGCGC TGCGCAACGA TTGCGCCATT GTTTACGCAG CGGATAACGC TTACTTTCCG TACGGGGAAC TTTCAACCAG CGCGTTAAGG CAGCGAGTTA TTACATTTAT GGGCGAGCTC ATCGATCAAT ACTCGCCCAG TATTGCCGTT ATAGCCTGCA ATACTGCAAG CACAGCACTG CTTGCCGATC TTCGCGAAAC GTTTGATATC CCGTTTGTAG GTGTTGTACC CGCAATTAAA CCGGCCGCTA CCGCCACACA AACCGGCACT ATTGCCATTC TTGCGACCAG CGCTACAGTT ACACGCGATT ACACGCGCGA CTTAATCAAT GAGTTTGCGC CTAATAAAAC CGTTATTTTG CACAGCGCTC AACCACTGGT AAGCGCAGCA GAGCAGCTAA TACAAAACAA CCAATGCCCC AATTCCGCCA TACAAGGCGC CCTGAGCGAA CTTTTCGCCA AACCCGGCGC AGAACATATA GACACAATAG TATTGGCTTG TACCCACTTC CCACTGCTAC GTGAAGCCAT TCAAGCCCTG CTTCCCGCTT CCATCACGCT ACTGGACTCT GGCGATGCCA TAGCTCGCAG AGTCGACTCC TTACTTTGCG CAACCAACAC CTTAAAGCAA ACGCAGCGCA TTTCGGTACA TTTATCTAAG CCCTGCACCA CCACGCTAAA CGCATACAAT AATTTTTTAG CCGCACACAT CCAAATCAAA CGCAGATAA
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Protein sequence | MTESPRQPDP NTPTVLVFDS GAGGLSICTK IMALRNDCAI VYAADNAYFP YGELSTSALR QRVITFMGEL IDQYSPSIAV IACNTASTAL LADLRETFDI PFVGVVPAIK PAATATQTGT IAILATSATV TRDYTRDLIN EFAPNKTVIL HSAQPLVSAA EQLIQNNQCP NSAIQGALSE LFAKPGAEHI DTIVLACTHF PLLREAIQAL LPASITLLDS GDAIARRVDS LLCATNTLKQ TQRISVHLSK PCTTTLNAYN NFLAAHIQIK RR
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