Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1607 |
Symbol | tig |
ID | 3965713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2065583 |
End bp | 2066917 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920688 |
Product | trigger factor |
Protein accession | YP_527081 |
Protein GI | 90021254 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0544] FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) |
TIGRFAM ID | [TIGR00115] trigger factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000000266404 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAGGTTT CCCTAGAAAC TACTACCGGT TTGGAGCGCA AGCTAACTGT TGGCATTCCA GCAAGTGTTG TTGATCAAGA AGTCGCTAAA CGACTCAAGG AAGCCGCTAA AACGGTTCGT ATCAACGGTT TCCGTAAAGG CAAAGTGCCA ATGAGCGTTG TTCAGCAGCG TTACGGAGCA GGCGTTCGTC AAGAAGTGCT TGGCGATGCT ATTAATCGTT CATTTTACGA TGCAGTACGC AAAGAATCTT TGCGTCCTGC AGGTCAGCCG GCTATTGAGC CAAAGCAGCT TGAGCCAGGC AAAGACATTG AGTTTGTAGC TACTTTCGAA GTGTACCCAG AAATCGAAGT TTCTGGCTTA GAGTCAATCG AAGTTACTCG CTACAACGCA GAAGTTACCG ATGCAGACGT AGATACCATG ATCGAGACTC TGCAAAAGAG TCAGGCTGAT TGGGCGCCAG TTAAGCGCAA ATCTAAAAAA GGCGATCGCG TAGTTATCGA CTTTAAAGGC ACCAAAGATG GCGAAGCCTT CGAAGGTGGC ACTGCTGAAG GTCAAACCCT TGTATTGGGT TCAAACTCTA TGATTCCTGG GTTTGAAAAA GGCATTATTG GCATGAAAGC TGGCGAAACA GAAACCATCA AGGTGACTTT CCCAGATGAT TACCAAGAAG AATCTCTACG CGGCGCAGAA GCCGAGTTTG AGGTTACTGT GCAAAAAGTT GAAGGTCAGA AGCTTCCTAA GCTTGATGAC GAGTTCTTTG CTAAGTTTGG CGTAACTGAA GGCGGCGAAG AAAAATTCCG TGCAGATGTT CGTGAGAACA TGGAGCGCGA AAAGCAAAAG GCACTTAAAG GTAAGCTAAA AGAGCAAGTG ATGAATGGCT TGGTTGCAGC AAATACCGTA GACATTCCAA AGTCGCTTGT TTCTGGTGAG ATCGATGCGT TGCGCAATCA AATGGGCAAC CAAATGATGC AGCAATACGG TTCTCAGGCT GAAGGTATCG ACTTTAAGTC AATCTTGCCA GACGATATGT TTAAAGAGCA GGCAGAGCGT CGCGTTGCTT TGGGTTTGAT TGTTTCTGAG ATTGTTAAAA ATGAAAAAAT CTCAGTAGAT AAAGAACTTG TTAAATCGTT GATTGAAGAT GTTGCATCTA CTTACGAGCA CCCTGAAGAA GTTGTAAATT ACTACTACGG TAATGAGCAG TTGTTGGGTG GTGTTGAGGC TGCAGCTTTA GAAGAGCAGG TTGTAAGCTT GGTGCTCTCT AAGGCAAAAG TAAGCGACGA AACAATTAGC TATGAAGAAG CTGTTAAGCC TGCTGCAAAA CAAGCTGAAG AATAA
|
Protein sequence | MQVSLETTTG LERKLTVGIP ASVVDQEVAK RLKEAAKTVR INGFRKGKVP MSVVQQRYGA GVRQEVLGDA INRSFYDAVR KESLRPAGQP AIEPKQLEPG KDIEFVATFE VYPEIEVSGL ESIEVTRYNA EVTDADVDTM IETLQKSQAD WAPVKRKSKK GDRVVIDFKG TKDGEAFEGG TAEGQTLVLG SNSMIPGFEK GIIGMKAGET ETIKVTFPDD YQEESLRGAE AEFEVTVQKV EGQKLPKLDD EFFAKFGVTE GGEEKFRADV RENMEREKQK ALKGKLKEQV MNGLVAANTV DIPKSLVSGE IDALRNQMGN QMMQQYGSQA EGIDFKSILP DDMFKEQAER RVALGLIVSE IVKNEKISVD KELVKSLIED VASTYEHPEE VVNYYYGNEQ LLGGVEAAAL EEQVVSLVLS KAKVSDETIS YEEAVKPAAK QAEE
|
| |