Gene Sde_1530 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1530 
Symbol 
ID3965058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1973515 
End bp1974990 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content46% 
IMG OID637920608 
Producthypothetical protein 
Protein accessionYP_527004 
Protein GI90021177 
COG category[S] Function unknown 
COG ID[COG3517] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03355] type VI secretion protein, EvpB/VC_A0108 family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.704852 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGATG CAGTTGCAGA AGCCCAAGAA GGCGCAGTAG AAACCCAAAC CTTAAGCCTG 
TTGGATCAAG CTATTCAAGC TACCAAACAA ACAGACACAG AAGAAGCTCA AGCCCTGTTA
AAAACCTTAA CAGAGGAAGC GCTTAAGGGA ACCGTTAGCT GGAATAAAAA CTTGATGGTC
ACCTTTAACA AGGCCATTGA AGCAATCGAC AAAGCAATTA GTGAGCAGTT GCGAGAAATT
ATGCACAACG AAAGTTTCCA GAAGTTAGAG GGAACTTGGC GTGGCATGCA CTACTTGGTA
AACAACAGTG AAACCAGCAC TTCTTTAAAA ATAAAATTAC TAAATGCAAG TAAAAAGGAA
GTGGCTAAAG ATCTTTCTAA AGCTGTTGAA TTCGACCAAA GCCAAGTATT TAAAAAGCTA
TACGAAAATG AATTTGGTAC TCCCGGTGGT GAGCCATATG GCGCGTTGAT CGGCGATTTC
GAATTCACTA ATCATCCCGA TGATATTGAG CTGTTAAGCG GTATGTCTAA CGTTGCGGCT
GCTGCATTTT GTCCGTTCCT ATCTGCCGCC GACCCGAAAC TATTTGGCTT TGATAAGTGG
AACGAACTTT CCAAACCACG CGATTTAAGC AAGATATTCG ACTCTGCTGA ATACACCAAA
TGGCGCTCTT TCCGCGATTC TGACGACTCG CGTTTTGTGA GTTTGGCCAT GCCGCGTGTT
CTTGCGCGTT TGCCCTATGG CGAAACCACA AAGCCTGTAG AGGCGTTTAG CTACGAAGAA
TTACCAGACG GTGAAAAGCC TCTTTTGAAT CAATATTGTT GGTCTAACGC AGCATATGTA
CTCGGTGCGC GCTTAACTGA CGCATTCGCA CAATACGGCT GGTGTACAGC TATTCGTGGT
GCAGAAGGCG GTGGTCGAGT AAATGATTTG CCTGTGCATT TGTCTACTAC CGATGATGGC
GATATCGATA TGCAATGTCC TACCGAAATT GCTGTTACCG ATCGTCGTGA GGCCGAGCTT
AGCTCTTTAG GGTTTATGCC TTTGTCTCAC TACAAAAATA CTGACTACGC CGTTTTCTTT
GGTGGGCAAA CTACTCAGCG TCCTCGTGTA TACGCTCAGC CAGAAGCAAC CGCCAATGCA
GCTATTTCTG CGCGTTTGCC TTACATAATG GCTACTTCTC GTATTGCTCA TTACTTGAAA
GTTATGGCTC GCGATAAAGT GGGTAGTTTT ATGGAATCTG ACGATATGCA GCATTGGCTA
AACCGTTGGA TTAACGGCTA TGTAAACGCG AGCGAAGAAG GCGGGCAAGA TATGCGTGCG
CAATACCCGC TTCGCGAAGC TAAAATTGAA GTTAAGCCCG TACCAGGCAA GCCCGGTTCA
TATAATGCCG TTGCGTGGTT GCGCCCTTGG CTGCAAATGG AAGAGTTGAG CACTTCTTTA
CGAATGGTTG CTCGCATACC AGAGATTGGT GGCTAG
 
Protein sequence
MSDAVAEAQE GAVETQTLSL LDQAIQATKQ TDTEEAQALL KTLTEEALKG TVSWNKNLMV 
TFNKAIEAID KAISEQLREI MHNESFQKLE GTWRGMHYLV NNSETSTSLK IKLLNASKKE
VAKDLSKAVE FDQSQVFKKL YENEFGTPGG EPYGALIGDF EFTNHPDDIE LLSGMSNVAA
AAFCPFLSAA DPKLFGFDKW NELSKPRDLS KIFDSAEYTK WRSFRDSDDS RFVSLAMPRV
LARLPYGETT KPVEAFSYEE LPDGEKPLLN QYCWSNAAYV LGARLTDAFA QYGWCTAIRG
AEGGGRVNDL PVHLSTTDDG DIDMQCPTEI AVTDRREAEL SSLGFMPLSH YKNTDYAVFF
GGQTTQRPRV YAQPEATANA AISARLPYIM ATSRIAHYLK VMARDKVGSF MESDDMQHWL
NRWINGYVNA SEEGGQDMRA QYPLREAKIE VKPVPGKPGS YNAVAWLRPW LQMEELSTSL
RMVARIPEIG G