Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1530 |
Symbol | |
ID | 3965058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1973515 |
End bp | 1974990 |
Gene Length | 1476 bp |
Protein Length | 491 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920608 |
Product | hypothetical protein |
Protein accession | YP_527004 |
Protein GI | 90021177 |
COG category | [S] Function unknown |
COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.704852 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGATG CAGTTGCAGA AGCCCAAGAA GGCGCAGTAG AAACCCAAAC CTTAAGCCTG TTGGATCAAG CTATTCAAGC TACCAAACAA ACAGACACAG AAGAAGCTCA AGCCCTGTTA AAAACCTTAA CAGAGGAAGC GCTTAAGGGA ACCGTTAGCT GGAATAAAAA CTTGATGGTC ACCTTTAACA AGGCCATTGA AGCAATCGAC AAAGCAATTA GTGAGCAGTT GCGAGAAATT ATGCACAACG AAAGTTTCCA GAAGTTAGAG GGAACTTGGC GTGGCATGCA CTACTTGGTA AACAACAGTG AAACCAGCAC TTCTTTAAAA ATAAAATTAC TAAATGCAAG TAAAAAGGAA GTGGCTAAAG ATCTTTCTAA AGCTGTTGAA TTCGACCAAA GCCAAGTATT TAAAAAGCTA TACGAAAATG AATTTGGTAC TCCCGGTGGT GAGCCATATG GCGCGTTGAT CGGCGATTTC GAATTCACTA ATCATCCCGA TGATATTGAG CTGTTAAGCG GTATGTCTAA CGTTGCGGCT GCTGCATTTT GTCCGTTCCT ATCTGCCGCC GACCCGAAAC TATTTGGCTT TGATAAGTGG AACGAACTTT CCAAACCACG CGATTTAAGC AAGATATTCG ACTCTGCTGA ATACACCAAA TGGCGCTCTT TCCGCGATTC TGACGACTCG CGTTTTGTGA GTTTGGCCAT GCCGCGTGTT CTTGCGCGTT TGCCCTATGG CGAAACCACA AAGCCTGTAG AGGCGTTTAG CTACGAAGAA TTACCAGACG GTGAAAAGCC TCTTTTGAAT CAATATTGTT GGTCTAACGC AGCATATGTA CTCGGTGCGC GCTTAACTGA CGCATTCGCA CAATACGGCT GGTGTACAGC TATTCGTGGT GCAGAAGGCG GTGGTCGAGT AAATGATTTG CCTGTGCATT TGTCTACTAC CGATGATGGC GATATCGATA TGCAATGTCC TACCGAAATT GCTGTTACCG ATCGTCGTGA GGCCGAGCTT AGCTCTTTAG GGTTTATGCC TTTGTCTCAC TACAAAAATA CTGACTACGC CGTTTTCTTT GGTGGGCAAA CTACTCAGCG TCCTCGTGTA TACGCTCAGC CAGAAGCAAC CGCCAATGCA GCTATTTCTG CGCGTTTGCC TTACATAATG GCTACTTCTC GTATTGCTCA TTACTTGAAA GTTATGGCTC GCGATAAAGT GGGTAGTTTT ATGGAATCTG ACGATATGCA GCATTGGCTA AACCGTTGGA TTAACGGCTA TGTAAACGCG AGCGAAGAAG GCGGGCAAGA TATGCGTGCG CAATACCCGC TTCGCGAAGC TAAAATTGAA GTTAAGCCCG TACCAGGCAA GCCCGGTTCA TATAATGCCG TTGCGTGGTT GCGCCCTTGG CTGCAAATGG AAGAGTTGAG CACTTCTTTA CGAATGGTTG CTCGCATACC AGAGATTGGT GGCTAG
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Protein sequence | MSDAVAEAQE GAVETQTLSL LDQAIQATKQ TDTEEAQALL KTLTEEALKG TVSWNKNLMV TFNKAIEAID KAISEQLREI MHNESFQKLE GTWRGMHYLV NNSETSTSLK IKLLNASKKE VAKDLSKAVE FDQSQVFKKL YENEFGTPGG EPYGALIGDF EFTNHPDDIE LLSGMSNVAA AAFCPFLSAA DPKLFGFDKW NELSKPRDLS KIFDSAEYTK WRSFRDSDDS RFVSLAMPRV LARLPYGETT KPVEAFSYEE LPDGEKPLLN QYCWSNAAYV LGARLTDAFA QYGWCTAIRG AEGGGRVNDL PVHLSTTDDG DIDMQCPTEI AVTDRREAEL SSLGFMPLSH YKNTDYAVFF GGQTTQRPRV YAQPEATANA AISARLPYIM ATSRIAHYLK VMARDKVGSF MESDDMQHWL NRWINGYVNA SEEGGQDMRA QYPLREAKIE VKPVPGKPGS YNAVAWLRPW LQMEELSTSL RMVARIPEIG G
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