| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1523 |
|---|
| Symbol | |
|---|
| ID | 3965051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1964450 |
|---|
| End bp | 1965859 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637920601 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526997 |
|---|
| Protein GI | 90021170 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.414466 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.78534 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAACT CGGATATAAC AGTAATTAAG CCTCGACCAG GAAAGCGAGC AAACGCGCCC
CAACAAAGCG TAACTCCGTC GTCGGATCAG ACCATAATAA AGCCGCGCCC TCGCCCCGGC
GGCAAGCGCA CACCTCCCAC TGCGGCAATG GGCGATACGA CTGTTATAAA GCCTCGCCAC
CCAAACCAAT CGGCAACTGT AGACTTAAAA TTCGCAGCCA TAGAGAACAC ACACGCAACA
ACAATTGCCG AGGCGGCATC CCCCGTTTTG GCGCTTGCGA CTCAACTAAA GCAAATTCAA
GGTAAAGTAG ATGGCCAGCG CCTACGAAAT TATGTGCAAG AGTCCATTAA ACAGTTTGAT
AGCAAAATAA CCAAACTTGA AAGCGATATT CAAATAAGGC AAGACGCCAA CTATATACTG
TGCGCTCTTA TTGACGAGAC CATTCTAAAT ACCACTTGGG GTGAGATGTC TGGCTGGAGC
CAACACCCTA TACTCAGTAT TTTTCACAAA GAAACCTACG GTGGAGAAAA ATTCTACCGC
ATATTAGATA CAAGCTTAGA ATCCCCTTAC GAGCATAAAG ATTTACTAGA AATACTTTTT
GTTGCAATGT CACTTGGTTT TATGGGAAAG CTGAGAATAG ACCCTCAAGG CCCTATAAAA
ATTGAAAAAA TCCGTAGTCG TCTTTACGAC GTACTACATA GATCCAGAGA GAAATACAAC
AACACCCTAT CGGTTAATAT TTCTCCGCAA ATCAGTAATA AGCAACACCT ATACTCATTT
TTACCTGCTT GGCTGTTAAT CGGCACACTT GTGCTCGCCG CATTTGGCCT ATACAGCTAT
TGGCTTATCG GCTTAAACAA AGAGTCGGAC ACAACGCGCG TACTAATGAC TAACCTAATT
CCCACGCCCG AGAAAAAAGT ACTCGACCCC AGTATGGTTC GGCCTGAATT TATCGAGCTG
CGCGCTTTAC TTACCCCAGA AATAGACAGA GGTATTTTAA GTGTGCAGGA CTACCCGACT
CACACCTCGA TAGTGCTGCA CAACCAAGAG CTTTTCACCT CTGGCAATAT CAATATCACA
CCCTCTTTTG AGCCAATATT AGATAAAATA GCCAAGGCAC TGGAAGCCAT ACCGGGCAGA
ATTATCGTAT CTGGCCATAC CGATAACGAA TCTATTCGCA CACCGCGCTA CCCTTCTAAC
TGGCACCTCT CCCTTGCTCG CGCAAGTGAA GTGGTTAAGT ACTTAGCTGC AAGTGCAGAC
CTTAAATCAC GCCTACTACC TGAAGGACGC GGGGCTAACG AACCCATTAT GAGTAACGAC
ACCGCCGCTG GGCGCGCCCA CAATCGCCGT GTTGTTATCG ACGTTTATTA CCATCAAGGA
TTAATAGCTA GCGAACAGCA AGCTAAATAG
|
|---|
| Protein sequence | MDNSDITVIK PRPGKRANAP QQSVTPSSDQ TIIKPRPRPG GKRTPPTAAM GDTTVIKPRH
PNQSATVDLK FAAIENTHAT TIAEAASPVL ALATQLKQIQ GKVDGQRLRN YVQESIKQFD
SKITKLESDI QIRQDANYIL CALIDETILN TTWGEMSGWS QHPILSIFHK ETYGGEKFYR
ILDTSLESPY EHKDLLEILF VAMSLGFMGK LRIDPQGPIK IEKIRSRLYD VLHRSREKYN
NTLSVNISPQ ISNKQHLYSF LPAWLLIGTL VLAAFGLYSY WLIGLNKESD TTRVLMTNLI
PTPEKKVLDP SMVRPEFIEL RALLTPEIDR GILSVQDYPT HTSIVLHNQE LFTSGNINIT
PSFEPILDKI AKALEAIPGR IIVSGHTDNE SIRTPRYPSN WHLSLARASE VVKYLAASAD
LKSRLLPEGR GANEPIMSND TAAGRAHNRR VVIDVYYHQG LIASEQQAK
|
|---|
| |