| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1522 |
|---|
| Symbol | |
|---|
| ID | 3965050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1960893 |
|---|
| End bp | 1964438 |
|---|
| Gene Length | 3546 bp |
|---|
| Protein Length | 1181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637920600 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526996 |
|---|
| Protein GI | 90021169 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.29104 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACGTT TTTTCCAACA ATTTACCCAG CCCTGGTTTC TTTCTCTTTT GGGCGTACTT
TTGCTGTGCT TGATTATTTG GTACATAGGG CCACTTATAG CAATTGCAGA GTACAAACCA
CTTAGCGCCG AGTGGGTAAG ATTAAGCATG GTATTTGTTG CCCTTATACT TTGGGGCTTA
AATAATTTAC GTAAGAGAAC CAGAACAAAC CAAGCCACAG ATAAATTGGC AAATGCTATT
GCGGAAGATG CCAAGCCAGC TGCTAGCAAA ACCAAGAAGG TACCATCGGC CGATGAACAA
ATTTTAGAAT CCAACCTTCA AAAAAGCCTT GGCTTGCTAC AAGGTAGTGG CTTTGGCAAA
GACAATAAAC TGTATAAGCT GCCATGGTAT ATGGTAATCG GCGCCCCAGG CTCAGGAAAA
ACCACAGCGT TAAAGAATTC TGGCCTTAAC TTCCCGCTGC AAAATAAACT TGGCGACGCC
CCCATTCAAG GCGAAGGCGG CACACGCTAC TGCGACTGGT GGTTTACCGA GGAAGCCATA
TTAATTGACA CCGCCGGCAG GTACACCACG CAAGACAACC CACAAACTAA AGACAGTGAA
GCGTGGCTTG GCTTTTTAGC GCGCCTTAAA AAAGCGAGAC CCAAGCAACC CTTAAACGGC
ATAATTGTTA CTGTAAGCAT ACAGGATATT CTGCAAAAGA CGCCCACTCA AAAAGCTTTA
CAAGCAACGG CAATAAAGCA GCGCGTACAA GAGCTCAACA ATCATTTAAA CATGAAAATA
CCGGTGTATT TGGTATTAAG CAAACTCGAC ATGGTTGCAG GCTTTAACAG CTTTTTCTCT
GATTTAGAAG CGCAAGACAG AGAACAAGCA TGGGGGTTTA CCTACAGCCA GTTCAAAGCG
GGCGATATTT CTGCTACTGA AGAAGTGTTT AACAATGAAT TTGATTTACT ACTACAACGC
CTTGAAGACC GTGTGCTATC TCGGCTAAAT AATGAGCACA GCCCACAAAA GCGTGCATTA
ATCTACGAGT TCCCTCGTCA GATGCGCGCA CTTAAAACTG AGATTCTTAA GTTTGTAGCC
CCTATTTTTA CCCCCAATCA ATTTGAAACC CCTATTATGT GGCGCGGCTT ATACCTGCTT
AGTAGCACGC AGAGCAATAT GGCTTCGCGC TGGGTAACAG GTATTTTACC CCCAGAACAA
TGCGCGCCCC CAATTGACAT AATTGGCATT CAACCTAAAA CCTATTTCGT TAATAACTTA
CTTAAAAAAG TTATCTTTGC TGAGGCCAAC CTAGCAACAC TAAACGACAA AATGCGCGCT
CGTTACCGCT GGATATACAC TGGCCTAACA GGCTGTGCTA TTGCTGCTTT TTCTTGCTTG
GCCATCGCCT GGTCGCACAG TAAAACCTTA AATAAGGATT ACATTCACGA AATTGAAGAC
CAGCTAGAAA AGTATTCTAA AATTGATAAA AAACAAAATA CTGCAGTGCG AGACTGGCAC
AACCTCGCCT TAAAACTAAA CCTACTGCGA GACTTACCCA CAGGCTATAT GCTTAAAGAT
AGCCAATATA CCTTTAAACA GGGTTTTGGT TTATACCAAG GTAACAAGTT AGGTGAACAA
GCCGAAACCA CCTATAAAAA AGCGCTCGAA TCGTTTTTTA TGCAGCACTT AGAAGAAATG
CTAGGCGAAC AGCTTGAGCT TGCTAAAAAT GACGATGAGC GACTGTACGA AGCCCTTAAG
TTCTACTTAA TGCCCTACCA CTCCAGCAAA ATGGATACAG ACAGTTTTAC CTTATGGGTA
AACATTCTAT GGGAGCGCCA ACTACCTAAT CAAAACAAGC AAGTTTTATT AAGTGAGTTA
AATAGCCACC TTAAAACTGC GCTAAGCGAA AAAGTATCCC CGTTTCCTAT CGACGACACT
AAAGTCGAAA TGGCCCGTAA CATACTTATA AAAACCCCGC TTGATCTACG CGTATACCGA
CGCTTAAAAA ATGATTACAT GGATCTTCAT CCAGAAGAGT TTTCGATCAA AAGCGTATTA
GGCAAAAAAG CAGATGCAAT GTTTTATAGA AAAAGTGGAA AGGCTCTTGA AAATGGCATT
CCAGAATTAT TCACCTATTC TGGGTTTCAT CGAGGGTTTA ACTTAGAGAA CATTAAATTA
TCGCAACGCC TAGCCGATGA ACAATGGATT TATGGCGACA AACAAGAAGA GGCGCTTACT
GAAGAGCGCA TAAAAGAAAT AAGCAGCAGA GTAAACCAAT ATTACTTTAA CGAGTATATT
GCGCGCTGGG ATGAATACCT AAACGATGTA GCTATTCAAT CGTTTGGCAC CGTTAACCGA
GGCCAATCTG TGGTGCAAAT GCTTGCCAGC TCTGACCAAC CGCTGGTTAA ACTGCTTGTT
CAAATTCGCA AACATACCGC ACTAAGCGAA GCGCCTGTTA TTAGCGACAA CATGAAAGAT
TCCGCTAACC AATTAGCTGA AGAATTTTCC AGCAGTCAAA AAGGTAGACT CGAACGGTTA
GTGCCAAAAT CTGCGGGGCT TAGTAATATA AAACTCCCCG GCTTCGACGT AACCGAGCAT
TTCGAAGACC TAAACAGCTA TATAAATACT GAAGAAGGCC TGCCTTTACT GCAGTTACAG
CAAGCTTTAA TTAATTTAGA CGACTACTTT CAAAACTTAG CTTATTCTGA AAACACCAAA
CAAGCCGCAT TTGACGCTAG TAAAGAATGG AAAGGTGGCA GCAGCCCTGT TGTATTTGTA
CAGCGCGCTA TATCCGATGC ACCACCTCAA ATTGAAACTT GGTTCTCATC TATTGCAAGA
GATACCGCGC AGGTTACCGC AGCAGCTACC CAAAGCCATA TGAATAATAT TTGGCAAACA
GAGGTTGTGA GTTTTTATAA TCGTGCGATT AAAGATAAAT ACCCCTTAAA CCCAAAAAGT
AAGCGTGATG TTAAACTAGC AGACTTCACA AAATTTTTTG GCCCCGCCGG CATATTAGAT
TCCTACTTTG TGGAATATAT AGAACCCTTT GTAGACACAT CTAAACACCC GTGGCGCTGG
AAGAAAAATA TAGGCCTTAG CACAAACAGC CTAGAACTTT TTTATCAAGC CCAAAACATT
AAAAATGCCT ACTTCTCGGA TAAAAGCGGC GAACCAGAAG TTGCATTCTC GATGAAGCCG
CACACACTCG ACCATATTGC CAGTGGCTTT TTACTAGAAA CAGCAGGTAC CACTATCGCC
TACAATCACG GCCCAGTGCG CAATGTAAAT GTACTATGGC CTGGCGCAAA AACAGACCTA
TCTAAAATTG TTTTTAGCCT GTCCAGTAAA GGCACCCCAA TTAGCGCTCG CACCGAAGGC
GAGTGGAGCT GGTTTAGACT GCTAGACGAA CACAGCAAGA TAGAACGCAA GAAAGAATCC
GACGGATTAT TGGTTACTTT TGAACTGGAT GGAATTGCTT CGGCTTATAT CATTCAGCCC
GCAAGTACCG ACAACCCTTA CCATAATAAA GATGTGCAAA AGTTTAGCTT GCCCACACAG
CTGTAA
|
|---|
| Protein sequence | MKRFFQQFTQ PWFLSLLGVL LLCLIIWYIG PLIAIAEYKP LSAEWVRLSM VFVALILWGL
NNLRKRTRTN QATDKLANAI AEDAKPAASK TKKVPSADEQ ILESNLQKSL GLLQGSGFGK
DNKLYKLPWY MVIGAPGSGK TTALKNSGLN FPLQNKLGDA PIQGEGGTRY CDWWFTEEAI
LIDTAGRYTT QDNPQTKDSE AWLGFLARLK KARPKQPLNG IIVTVSIQDI LQKTPTQKAL
QATAIKQRVQ ELNNHLNMKI PVYLVLSKLD MVAGFNSFFS DLEAQDREQA WGFTYSQFKA
GDISATEEVF NNEFDLLLQR LEDRVLSRLN NEHSPQKRAL IYEFPRQMRA LKTEILKFVA
PIFTPNQFET PIMWRGLYLL SSTQSNMASR WVTGILPPEQ CAPPIDIIGI QPKTYFVNNL
LKKVIFAEAN LATLNDKMRA RYRWIYTGLT GCAIAAFSCL AIAWSHSKTL NKDYIHEIED
QLEKYSKIDK KQNTAVRDWH NLALKLNLLR DLPTGYMLKD SQYTFKQGFG LYQGNKLGEQ
AETTYKKALE SFFMQHLEEM LGEQLELAKN DDERLYEALK FYLMPYHSSK MDTDSFTLWV
NILWERQLPN QNKQVLLSEL NSHLKTALSE KVSPFPIDDT KVEMARNILI KTPLDLRVYR
RLKNDYMDLH PEEFSIKSVL GKKADAMFYR KSGKALENGI PELFTYSGFH RGFNLENIKL
SQRLADEQWI YGDKQEEALT EERIKEISSR VNQYYFNEYI ARWDEYLNDV AIQSFGTVNR
GQSVVQMLAS SDQPLVKLLV QIRKHTALSE APVISDNMKD SANQLAEEFS SSQKGRLERL
VPKSAGLSNI KLPGFDVTEH FEDLNSYINT EEGLPLLQLQ QALINLDDYF QNLAYSENTK
QAAFDASKEW KGGSSPVVFV QRAISDAPPQ IETWFSSIAR DTAQVTAAAT QSHMNNIWQT
EVVSFYNRAI KDKYPLNPKS KRDVKLADFT KFFGPAGILD SYFVEYIEPF VDTSKHPWRW
KKNIGLSTNS LELFYQAQNI KNAYFSDKSG EPEVAFSMKP HTLDHIASGF LLETAGTTIA
YNHGPVRNVN VLWPGAKTDL SKIVFSLSSK GTPISARTEG EWSWFRLLDE HSKIERKKES
DGLLVTFELD GIASAYIIQP ASTDNPYHNK DVQKFSLPTQ L
|
|---|
| |