Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1516 |
Symbol | |
ID | 3965044 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1955429 |
End bp | 1956334 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637920594 |
Product | response regulator receiver domain-containing protein |
Protein accession | YP_526990 |
Protein GI | 90021163 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.000626051 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00569858 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGCTATACG CCATCCCAAG TATCTCGGCT ATTGCTATAA AACTAGTTCT ATTATGGCGA GCCAGACAAA GCCTGCTGAT AACGAACCAA GCTTTTTTAG CCGTTTTCAT TTCACTACTG GCTCTGAACA TTAGTGAGAT GTTGTTGTTT ACACTCAACC TTAAAGAGAG TGGCGCAACA ATCCTTGTTA TGGCGCATTA TATATTCGGC CTTTTTTCCA TTCTTTCCGT GTTAGGGATT ACTCTGTCGA TTACTCGACA GGTCTTTCCT ATTCGCACGC TTGCAACCTT TGGTTGTTTA ATGGCGATTT TTATCGCAAT ACCAGGGCTC GCAATAGAAG GAACAAAAAG TATTGGATAT TCCTATACAA GGATTCAAGG CCCATACTAT TTCGTAGTCC AACTTGCCCT ACTTGTTCCA TTTAGTGCAT CAATTGGCTT GCTAATACAC GGCGCCCTTA GAAGCAAATC TAAAGAAATA AAAAATAAAT GCTCGGTTTT ATTAATATGC CTAACCCCAT CATTTGTAAG CCTTTTTATA ATCGTTGCCT TAATGCAATT TGGCTTTCAA ATAAACGCCA CTGTTGTTAT ATCGTTCTCC ATTAATATTT TACTTTTTGG CTTATTGTAT CTAGAGGGCA AGTACCATAT ATACGGGCTT CTTTCCTCAC TACCAGGCAC CAAATATAAC GACAGCGCCA GAATCCTGAC TCAAGCCTTG TTCGACCCAA ACATGCCTCT AGAAAAGGCA AAAGAACTGA TGGATATAGA AAAGACTAGA TACACGCTAG AACTAACAAG AGGAAATCAA AGCGAAGCTG CACGAATTCT TGGTGTCTCT AGACCCACGA TCTGCAGAAG AATCAAGCTA ATTGAGAGCC AATATACAAA AGCACGTAAG CTTTAA
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Protein sequence | MLYAIPSISA IAIKLVLLWR ARQSLLITNQ AFLAVFISLL ALNISEMLLF TLNLKESGAT ILVMAHYIFG LFSILSVLGI TLSITRQVFP IRTLATFGCL MAIFIAIPGL AIEGTKSIGY SYTRIQGPYY FVVQLALLVP FSASIGLLIH GALRSKSKEI KNKCSVLLIC LTPSFVSLFI IVALMQFGFQ INATVVISFS INILLFGLLY LEGKYHIYGL LSSLPGTKYN DSARILTQAL FDPNMPLEKA KELMDIEKTR YTLELTRGNQ SEAARILGVS RPTICRRIKL IESQYTKARK L
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