Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1442 |
Symbol | |
ID | 3966159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1863304 |
End bp | 1863810 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637920519 |
Product | sigma-24 (FecI-like) |
Protein accession | YP_526916 |
Protein GI | 90021089 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.558792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGCTA CCGATAAATT AATTTCGCTT TACGAAAAAT ACCGGTCTGA CCTAGGTGGT TTAATCGCAA CGAAGTTTAA AAAGAATCAG CACGATGCGG AAGACATTGT TCAAGATGCT TTCTACAATG TATTGCGCGC AAAAAATATA GATACGATCG ATAACCCAAA GGCGTACTTG TATCAAGCCG CTTCAAATTT AGCGTTAAAC CGCATTCGTA AAAATAATTA TCATCGCGAT TACATTGCTA GTATGGATGA CACTGCAGTA GATATGCTTA CCCCAGAGCG CAATGTACTG GCGCAGCACG ACCTTAAAAT GTTGGAGACG GCAATGGATA AGCTACCGAA AAAATATCAA ACCACGTTTT TAATGAGTCG TATGCATTCC AAAAGCTATA AAGAAATTGC CGCAGATCTA AACATTGCCG AAAGCACAGT GGAAAAACAC ATTATAAAAA CCCTAAAGCA CCTGCGCAGC CATTTGGATG AGGAGGTTGG GGTATGA
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Protein sequence | MSATDKLISL YEKYRSDLGG LIATKFKKNQ HDAEDIVQDA FYNVLRAKNI DTIDNPKAYL YQAASNLALN RIRKNNYHRD YIASMDDTAV DMLTPERNVL AQHDLKMLET AMDKLPKKYQ TTFLMSRMHS KSYKEIAADL NIAESTVEKH IIKTLKHLRS HLDEEVGV
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