Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1417 |
Symbol | |
ID | 3968707 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1836068 |
End bp | 1837321 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637920494 |
Product | cysteine desulfurase |
Protein accession | YP_526891 |
Protein GI | 90021064 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0520] Selenocysteine lyase |
TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCAGG CTGGCAACGC TGTGAAAGGG TTTGATGTAG AAAAAATTCG CGAAGACTTT CCTATTTTGC ATCAAGAGGT GAATGGTCAC CCGTTGGTGT ATTTGGATAA CGCCGCCACT ACACAAAAGC CTAATGCGGT TATAGATGCT ATTAGCGATT ATTATCGCGG CTACAACTCC AATGTACACC GCGGTGCCCA CGCATTAAGT GATAAAGCCA CAGCTGGCTT TGAAGGTGCA CGCGATACTT TGGCGGCGTT TATTAACAGC CCAAGTCGCG AGCAGGTATT GTGGACTCGC GGTACTACAG AGGCTATTAA CTTGGTGGCC TTTACTTGGG GTAAACAAAA CCTTGAAGCC GGCGACCGAG TGTTGGTGTC TAATTTAGAG CATCACTCCA ACATTGTGCC GTGGCAAATG GTAGCGCAAG AAAAAGGCGC AAGTGTTGTA GCTATTCCAG TTTCAGATAG CGGCGCAATC GATTTAGATG CTTTTAAAGC CTTGTTAGTA AGTAATGAAG GCCCTGTTAA GTTTGTATCG GTAGGGCATG TGTCTAATGC GCTCGGTACG GTAAACCCAG TGGAAGAGAT TGTGGCACTA AGCCACGAAG TTGGTGCCAA AGTACTTATA GATGGCGCTC AGTCGGTTGG TCATTGGGCT GTAGATGTAC AGGCGCTAGA CTGCGACTTT TTCGCTTTTT CTGGCCACAA AATGTTTGGC CCAACAGGTA TTGGCGTATT GTGGGGTAAG CGCGACTTGC TCGAAGCAAT GCCGCCGTAT CAGGGCGGTG GTGAAATGAT CGAGACAGTA AGTTTCGAAG GCACCACCTA CAATGCATTG CCTTACAAAT ACGAAGCGGG CACGCCAGAT ATTGCCGGTG CTATTGGGTT GGCAGCCGCG GTAGATTATT TAAATAGTTT TGATCGCGAA GCGGCAGTCG CTCACGAAAA TGATTTGTTA CAGTATGCAT GGCAAAAAGC TGAAGGCTTT GCGGGGTTAA CTCGTGTAGG CACAGCGCCA AAAGTTGCCG GCGTGTTTAG CTTTTTGTTA AATGGTGCGC ACCCTTCAGA TGTAGGCATG CTAATCGATC AGCAGGGGGT GGCTGTGCGC ACAGGTCACC ATTGTGCTCA GCCTTTAATG GCACGCTTAG GTATACCGGG CACTGTGCGA GCATCGTTTT CTTTTTACAA CAATCGCAAT GATGTAGATC GATTGTTTGA AGCGCTAGAA AAAGCAAAAA CATTTCTTGT GTAA
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Protein sequence | MMQAGNAVKG FDVEKIREDF PILHQEVNGH PLVYLDNAAT TQKPNAVIDA ISDYYRGYNS NVHRGAHALS DKATAGFEGA RDTLAAFINS PSREQVLWTR GTTEAINLVA FTWGKQNLEA GDRVLVSNLE HHSNIVPWQM VAQEKGASVV AIPVSDSGAI DLDAFKALLV SNEGPVKFVS VGHVSNALGT VNPVEEIVAL SHEVGAKVLI DGAQSVGHWA VDVQALDCDF FAFSGHKMFG PTGIGVLWGK RDLLEAMPPY QGGGEMIETV SFEGTTYNAL PYKYEAGTPD IAGAIGLAAA VDYLNSFDRE AAVAHENDLL QYAWQKAEGF AGLTRVGTAP KVAGVFSFLL NGAHPSDVGM LIDQQGVAVR TGHHCAQPLM ARLGIPGTVR ASFSFYNNRN DVDRLFEALE KAKTFLV
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