| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1317 |
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| Symbol | |
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| ID | 3966088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1707703 |
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| End bp | 1710039 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920393 |
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| Product | RND efflux transporter |
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| Protein accession | YP_526791 |
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| Protein GI | 90020964 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00469095 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGGAT TTAATCATCA TTGGGCCAAG CGGGTTGTTA CATATCGCCT AGCATTGATC
ATTGGCATTG CCATTTTGAT ATGCCTCGCA CCACTCACAT TCAAAAACCT GCATCACGAT
AATTCCAACG AAGCTTACTT TCTTGAGCAC GACCCCAACC TTATTGCCTT TGACCGATTG
CTAGAAACCT TTGGGGACCC CGAATACCTT ATAGTGGGTA TACCTGCCCG CGCGGACGAC
AAAGACATAT TCAGTAAAGA TGCGATAAAG ATTATCGATG AGCTATCTGA TTTTTTAGAG
AATAACCGCC ACGTCACCCA AGTGCGCTCT CTGAGTAATT ATCAGTACAC CCATGATGAC
GACGGCATGA TGGCGACAGA TGATTTATTC GACGATATAG AAAACCTTAG CGAAAACGAC
CTAATAGCGG CACGCCGCAT TATGCAGAAA GAAACGCTGC CAATAGGCCG CCTAATAACT
GCAGATTTTC GCCACACTCA AATCCTCGCT CGCACCGAAT ATAAAAAAGG TGAAAACGCC
CACAAGGTAG AGCTTACTCA AGAGTTACTT GCCTTTATAA AGCAGCAAAA CTATAAAGCG
GCAGGGTTTG AGATAAAACT CTCTGGCATA CCTGTAATTG GTGAGCGTTT TGAAACCCTC
ACCCAGAATG ATATGGCGTG GATAAACCCA GTAATGGGCG TAATAATGAT CGCCATTTTG
TTCATCATCT TCCGCTCATT TTTCGCGACC GTAACCCCTA TATTTTTAAT ACTCGCGGTA
ATGGTATTGG TTACCTCCCT GCAGGGCTTA TTTAACTGGC CATTTACTGC GGTTAACTCT
GCGCTAATAC CCACAGTAAT AATTTTGGCA ATGGGTACCA GCGTGCACGT ATTGGTGGAA
TTTTTTCAAT ACCGTGCTGC AGGGCAAACA CCTCAGCAGG CAGCGCAATC CACCGTCGTC
AACCTTTTTT ACCCCATCTT CTTTACATGC CTTACTACAG CAGTTGGGTT TTATGCGCTA
TCCGTTACCG AGCTAAGCCC AGTTCGCCAA TTTGCATTAT TGGCAGGCAT CGCCCCGCTT
ATTATTTTTA TTCTTACCAA CACATTGCTA CCGGCTCTTT TAAGCTATAT TTCTTGGCTG
CCTCGCAATA TTGAAAACTT TTCTAAAACT AATGAACCTA AAACGGGATA TTTAGCCAAA
TTACTGCGCA CCCTACCTAT TTGGACCCAA ACCAACCGCA AAGCCATTGC AATTACAGGC
GTAGTTGTAA GTTTATTTAG CGCGTGGAGC GTCACCCAAA TTACAGTCGA TGCAAACATT
GTTAATTACT TCAAAAAAGA CAGCTGGGCC AACAGAGATT TACACTACTT TAACGATACG
TTTAAAGGCA TAAGTAACTT AGAAGTCATT ATCGACTCCG GCGAAGAAGG TGGGGTTAAA
TCGCCTGAGT TTTTACAGCG CGTTGAATCA TTACAAAATT GGCTAGGCAA TATTGAGGAA
GCAGGAAGAC CGATTTCTGT ATTAGATTTT TACAAACAAA TAAATCAATC CCTCAATGAA
AACAACCCCG ATTACTTTGC TCTACCCACT TCGCGCCCAA TGGCTGCCCA GTTTTTGTTG
TCCTACGAAA ATACCGGGCC TAATGAAGAC CTAAGCGATA TGGTGGATTA TTACCGACAA
GTACTCCGCA TTCAGCTGCC AATCATCAAT ATGGATGCAA CCAAAATGAT GGATGTGCTC
ACACATATAG AAGATCACAT AGCCACCCAC TATAGCGATT TAAATATTGA ACTAACCGGT
ACACTAGTGA TGAACAACGC TCAGAATCAC TATGTTAACA ACGGCATGTT TAAATCGTTT
GGCATTGCCA TTCTAGTAAT TGGCATTTGC TTTTTAGTAC TTTTCCGATC GTTAAAATAT
GGCGTTATTG CGCTTATACC CAGCATTGTG CCTGTATTGC TAACAGGCGG CTTAGTGTCT
TTCGCTGGGG TTGCCATAGA CCTAGGCACC ATGATTGTAG GCGCTATGAC CATAGGCATA
GCCGTGGACG ATTCAATTCA TATTATGAGC CGCTATTTAC AATATCGTAA ACAGGGTAAA
TCCACCCGCG AAGCCATAGA CGGCGCCATG CAAAGCGCTG GGCGCGCGGT AATACTTACC
TCTATTATTT TAATTAGCGG GTTTAGCGTA ATGCTACTTG GCTCTTTTGT TTCTTATATT
TATGTTGGTT TGTTTTCAGC CATTATTATG GGGCTGGCAT TAGCAGGCGA TTTAATTTTT
ATGCCGGCTC TGCTTTATTT ATTCGATAAC AGCGAAAAGA AAAAACAAAC TATTTAA
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| Protein sequence | MQGFNHHWAK RVVTYRLALI IGIAILICLA PLTFKNLHHD NSNEAYFLEH DPNLIAFDRL
LETFGDPEYL IVGIPARADD KDIFSKDAIK IIDELSDFLE NNRHVTQVRS LSNYQYTHDD
DGMMATDDLF DDIENLSEND LIAARRIMQK ETLPIGRLIT ADFRHTQILA RTEYKKGENA
HKVELTQELL AFIKQQNYKA AGFEIKLSGI PVIGERFETL TQNDMAWINP VMGVIMIAIL
FIIFRSFFAT VTPIFLILAV MVLVTSLQGL FNWPFTAVNS ALIPTVIILA MGTSVHVLVE
FFQYRAAGQT PQQAAQSTVV NLFYPIFFTC LTTAVGFYAL SVTELSPVRQ FALLAGIAPL
IIFILTNTLL PALLSYISWL PRNIENFSKT NEPKTGYLAK LLRTLPIWTQ TNRKAIAITG
VVVSLFSAWS VTQITVDANI VNYFKKDSWA NRDLHYFNDT FKGISNLEVI IDSGEEGGVK
SPEFLQRVES LQNWLGNIEE AGRPISVLDF YKQINQSLNE NNPDYFALPT SRPMAAQFLL
SYENTGPNED LSDMVDYYRQ VLRIQLPIIN MDATKMMDVL THIEDHIATH YSDLNIELTG
TLVMNNAQNH YVNNGMFKSF GIAILVIGIC FLVLFRSLKY GVIALIPSIV PVLLTGGLVS
FAGVAIDLGT MIVGAMTIGI AVDDSIHIMS RYLQYRKQGK STREAIDGAM QSAGRAVILT
SIILISGFSV MLLGSFVSYI YVGLFSAIIM GLALAGDLIF MPALLYLFDN SEKKKQTI
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