Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1307 |
Symbol | |
ID | 3966078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1698637 |
End bp | 1699899 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637920383 |
Product | oxaloacetate decarboxylase |
Protein accession | YP_526781 |
Protein GI | 90020954 |
COG category | [C] Energy production and conversion |
COG ID | [COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit |
TIGRFAM ID | [TIGR01109] sodium ion-translocating decarboxylase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0998305 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0365188 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCCTG GGCAGCTTTT CATGATTTTT GTGGGCATTC TGTTGCTGTT TTTGGCAATT CGTAAAGGGT TTGAGCCTTT ATTACTTGTG CCAATTGGCT TTGGCGGCAT TCTAGCTAAC ATCCCTGGCG CAGGGTTGGC CTTGCCGGCA GTCGAGAATG CCATTTTTGT TGCTGATCCT GCCGTGTTGG CTGCCTTAGC CGACACGTTG GGGTTGACCA GCTGGGAATC GCCCAAGGAG TTAGTGCATG CCTATGAGAT GGCTAGCCCC GCGGTTCACC ATGCAGCCCA TCAAGTTGCA GTCGGCTATG GCTATTCTAA CGGCATGCTT TATAACTTTT ACTCGGTTGC TATTGCTAGC GGCGTTGCGC CCCTGCTGAT TTTTATGGGT GTAGGGGCTA TGACCGATTT TGGTCCGCTC TTAGCAAACC CTAAAACTCT CTTTTTAGGT GCTGCGGCTC AGTTTGGTAT TTTTGCAACC GTACTTGGTG CAGTAGGCTT AGCAGCTACG GGTCAGATGG ACTTCACCAT TGCTGAGGCT GCGGCCATCG GTATTATTGG TGGCGCTGAT GGTCCAACAG CAATTTATGT TGCCAGTAAG CTGGCCCCCG ATTTACTGGG TGCAATTGCT GTTGCAGCAT ACTCGTATAT GGCGCTGGTA CCTATGATTC AGCCGCCAAT CATGAAGCTG CTTACTACAG AGTCCGAGCG CAAAATTGTA ATGACGCAAT TGCGAGCAGT AAGTAAACGC GAAAAAATCA CCTTCCCAAT TATGGTGTTG GTGCTTGTAG CGTTAGTGTT GCCAAGCGCT GCGCCGCTAC TGGGGATGTT CTGCTTTGGT AACTTGATGC GCGAGTGTGG CGTGGTAGAG CGTTTATCTG ATACGGCTCA GAATGCTTTA ATCAACATCG TGACCATTTT CTTGGGGCTA AGTGTTGGTT CTAAGTTGGC TGCAGATAAG TTCCTAGACC CTAAAACACT GGGTATTTTA GTGTTGGGTG TAGTGGCATT TGGTATTGGC ACTGCCGCAG GCGTACTTAT GGCTAAGCTC ATTAACTTGG TGAGTAAGCA AAAGATCAAC CCGCTTATTG GTTCTGCTGG GGTATCTGCT GTACCAATGG CGGCGCGAGT TTCAAACAAA GTGGGCTTGC AGTCTAACCC TCAAAACTTC CTATTAATGC ATGCTATGGG CCCCAATGTG GCCGGTGTTA TCGGGTCTGC CGTTGCTGCG GGCGTGATGA TTTCCATGGT TAGTGGTATG TAA
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Protein sequence | MMPGQLFMIF VGILLLFLAI RKGFEPLLLV PIGFGGILAN IPGAGLALPA VENAIFVADP AVLAALADTL GLTSWESPKE LVHAYEMASP AVHHAAHQVA VGYGYSNGML YNFYSVAIAS GVAPLLIFMG VGAMTDFGPL LANPKTLFLG AAAQFGIFAT VLGAVGLAAT GQMDFTIAEA AAIGIIGGAD GPTAIYVASK LAPDLLGAIA VAAYSYMALV PMIQPPIMKL LTTESERKIV MTQLRAVSKR EKITFPIMVL VLVALVLPSA APLLGMFCFG NLMRECGVVE RLSDTAQNAL INIVTIFLGL SVGSKLAADK FLDPKTLGIL VLGVVAFGIG TAAGVLMAKL INLVSKQKIN PLIGSAGVSA VPMAARVSNK VGLQSNPQNF LLMHAMGPNV AGVIGSAVAA GVMISMVSGM
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