Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1306 |
Symbol | |
ID | 3966077 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1696785 |
End bp | 1698575 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637920382 |
Product | oxaloacetate decarboxylase |
Protein accession | YP_526780 |
Protein GI | 90020953 |
COG category | [C] Energy production and conversion |
COG ID | [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00193568 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0412594 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAG CCAAAAAGCC ATTGGGCATA ACTGATGTGG TATTGCGAGA TGCGCATCAA TCGTTGTTTG CTACTCGATT GCGCATTGAC GACATGTTAC CTATCGCAGA AAAATTAGAT CAAGTTGGTT TTTGGTCGTT GGAATCTTGG GGCGGGGCAA CGTTTGATGC TTGTATCCGC TATTTGGGCG AAGACCCATG GGACAGAATT CGCGAACTTA AGAAAGCCAT GCCTAACACG CCTCAGCAAA TGTTGTTTCG CGGACAGAAC ATTCTAGGCT ACCGTCACTA TGCAGATGAT GTTGTAGAAA AGTTTGTAGA GCGCGCGGCA GTAAATGGTG TGGATGTATT CCGAGTATTC GACGCAATGA ATGATACTCG CAACTTGGAA ACTGCTTTAA AGGCCGTTAA AAAAGTTGGT AAACATGCAC AGGGTACCAT TTCTTACACT TTAAGCCCGG TTCATAGCAT CGATAAATGG GTTGAAATGG GCAAGCTGCT AGAAGATCTA GGTGCAGACT CCATTGCCAT TAAGGATATG GCTGGTTTAT TAAAACCCTA TGACGGTTTT GAACTAGTGC AAAAATTAAA GGCCGCGTGT GATATTCCAA TCCATATGCA GTGCCACGCT ACAACTGGCT TGGCCCACGC CACCATTCTT AAGTGCGTAG AAGCAGGTAT TGATAACGTC GATACTGCTA TTTCGTCTAT GTCCATGACC TATGGTCACA GCCCCACAGA AACGTTGGTT GCAACCCTTC AAGGTACAGA GCGCGATACC GGCTTGGACC TAGAGTTGCT GGAAGAGATT GCTATCTACT TCCGCGAAGT GCGTAAAAAG TACGCCAAGT TCGAAGGCTC TTTACGCGGT GTGGATTCAC GCATTCTTAC TGCTCAAGTT CCTGGTGGCA TGCTCACCAA TATGGAAAGC CAGCTTAAAG AGCAGGGCGC AGAAGATAAG TTTGATCAGG TACTGCAGGA AATTCCACGC GTTCGCGAAG ATTTAGGTTT TATTCCATTG GTAACGCCAA CCTCTCAAAT TGTTGGCACA CAAGCTGTTA TGAACGTGCT AAGCGGAGAA CGTTACGCGC GTATTTCTAA AGAGACAGAA GGCGTACTTA AAGGGCTTTA TGGCGCGACT CCTGCACCAG TAAATAAAGA GTTGCAAGCT AAAGTGTTGG CTGAGGGCGA AGAAGTTATC ACTTGTCGCC CAGCAGATTT ACTTGAGCCT GAGCTTGAAA AGCTCACCAA GGCGTTGTTA GAAGAAGCGG CGGCTAAAAA TATCACCTTA GCTAAAGGTG ATAATCAAAT CGATGATGTG CTTACTTACG CGTTGTTCAA CCAGATTGGC CTTAAGTTCC TTGAAAATAA AGGTAACCCA GACGCATTTG AGCCTGCGCC AACCGGTAAA GAAACTGATG TTGTACTGGC GCCAAATGGC GATGAAGTTT ACACCGTGAC AGTAGAGGGT GAGGACTACA CCGTAACCGT GAGCAATGGC GGTGAGTTAA CCGGCATTGT GCCGTTAAGT GGCGCATCTT CATCGGGATC TTCTGCTTCT AAGTCTGAAG TTTCGGGCGG TGAGCCGGTG CTAGCTCCGT TGGCGGGTAA TATTTTCCGC GTCATGGTCT CTCCGGGTCA GCAGGTGGAA GAAGGTGACA CATTGTTAGT GCTTGAAGCT ATGAAGATGG AAACCCAAAT TAGCGCACCT CACGCAGGCA TTATTGGTGC CGTAAACGTG CGCGAAGGTG ATGTTGTAAC CGTGGGCGAT AACCTACTAA CCATTGCTTA A
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Protein sequence | MSEAKKPLGI TDVVLRDAHQ SLFATRLRID DMLPIAEKLD QVGFWSLESW GGATFDACIR YLGEDPWDRI RELKKAMPNT PQQMLFRGQN ILGYRHYADD VVEKFVERAA VNGVDVFRVF DAMNDTRNLE TALKAVKKVG KHAQGTISYT LSPVHSIDKW VEMGKLLEDL GADSIAIKDM AGLLKPYDGF ELVQKLKAAC DIPIHMQCHA TTGLAHATIL KCVEAGIDNV DTAISSMSMT YGHSPTETLV ATLQGTERDT GLDLELLEEI AIYFREVRKK YAKFEGSLRG VDSRILTAQV PGGMLTNMES QLKEQGAEDK FDQVLQEIPR VREDLGFIPL VTPTSQIVGT QAVMNVLSGE RYARISKETE GVLKGLYGAT PAPVNKELQA KVLAEGEEVI TCRPADLLEP ELEKLTKALL EEAAAKNITL AKGDNQIDDV LTYALFNQIG LKFLENKGNP DAFEPAPTGK ETDVVLAPNG DEVYTVTVEG EDYTVTVSNG GELTGIVPLS GASSSGSSAS KSEVSGGEPV LAPLAGNIFR VMVSPGQQVE EGDTLLVLEA MKMETQISAP HAGIIGAVNV REGDVVTVGD NLLTIA
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