Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1283 |
Symbol | |
ID | 3965265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1646062 |
End bp | 1646838 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637920357 |
Product | 2-deoxy-D-gluconate 3-dehydrogenase |
Protein accession | YP_526757 |
Protein GI | 90020930 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0000166105 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.890214 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAG TGTTTTTTAA AGAAATGTTC GGCCTAAACG GTAAAGTTGC CATTGTGACA GGCGCAACGC GTGGGTTAGG TCAAGCAATG GCGTTAGCGT TGGCGAAAGC CGGCGCTAGC GTGGTGGCAG TAGGTTCGAA GTTAGAAAAT TTAGAATCGA CCATGGCGCT GCTTGCAGAG TACGACGTAC CGACATTGGC GTTAGCTTGT GATCAGACCA AACCTGCAGC CATTACCCAA GTAGTTACTG ATACGGTTGA AAAGTTTGGC CGAATTGATG TGCTAATAAA TAATGCCGGC ACTATACGCA GAGCACCAGC TGTAGATTTT TCTGATGACG ACTGGGAAAA CGTTATAGAA ACCAATCTTA ATGGTGTTTT TCGATTTTGT CGCGCCGTTG GCAAGGTCAT GCTTGAGCAA CGTAGCGGTA AAATAATTAA TATCGCCTCG CTATTAAGTT TCTCTGGCGG TTTAACTGTG CCAGCTTATG CCGCAAGCAA AGGTGGTGTG GCGCAGTTAA CCAAAGCGTT AGCGAATGAG TGGGCGGCTA GTAACGTTCA AATCAATGCT ATTGCGCCAG GGTACTTTAA TACCGATAAC ACCGAAAATA TTCGCAAAGA CGCAGCGCGT TTTGAAAGCA TTAGCGCGCG TATTCCTGCG GGGCGTTGGG GCGAGCCTGA TGACTTAACG GGTGCTGCGG TGTTTTTAGC AAGTAATGCA TCTAATTATG TGAATGGCCA CATAATGTTG GTAGATGGTG GTTGGATGGC GCGTTAA
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Protein sequence | MSEVFFKEMF GLNGKVAIVT GATRGLGQAM ALALAKAGAS VVAVGSKLEN LESTMALLAE YDVPTLALAC DQTKPAAITQ VVTDTVEKFG RIDVLINNAG TIRRAPAVDF SDDDWENVIE TNLNGVFRFC RAVGKVMLEQ RSGKIINIAS LLSFSGGLTV PAYAASKGGV AQLTKALANE WAASNVQINA IAPGYFNTDN TENIRKDAAR FESISARIPA GRWGEPDDLT GAAVFLASNA SNYVNGHIML VDGGWMAR
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