Gene Sde_1283 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1283 
Symbol 
ID3965265 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1646062 
End bp1646838 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content47% 
IMG OID637920357 
Product2-deoxy-D-gluconate 3-dehydrogenase 
Protein accessionYP_526757 
Protein GI90020930 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID[TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0000166105 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.890214 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAG TGTTTTTTAA AGAAATGTTC GGCCTAAACG GTAAAGTTGC CATTGTGACA 
GGCGCAACGC GTGGGTTAGG TCAAGCAATG GCGTTAGCGT TGGCGAAAGC CGGCGCTAGC
GTGGTGGCAG TAGGTTCGAA GTTAGAAAAT TTAGAATCGA CCATGGCGCT GCTTGCAGAG
TACGACGTAC CGACATTGGC GTTAGCTTGT GATCAGACCA AACCTGCAGC CATTACCCAA
GTAGTTACTG ATACGGTTGA AAAGTTTGGC CGAATTGATG TGCTAATAAA TAATGCCGGC
ACTATACGCA GAGCACCAGC TGTAGATTTT TCTGATGACG ACTGGGAAAA CGTTATAGAA
ACCAATCTTA ATGGTGTTTT TCGATTTTGT CGCGCCGTTG GCAAGGTCAT GCTTGAGCAA
CGTAGCGGTA AAATAATTAA TATCGCCTCG CTATTAAGTT TCTCTGGCGG TTTAACTGTG
CCAGCTTATG CCGCAAGCAA AGGTGGTGTG GCGCAGTTAA CCAAAGCGTT AGCGAATGAG
TGGGCGGCTA GTAACGTTCA AATCAATGCT ATTGCGCCAG GGTACTTTAA TACCGATAAC
ACCGAAAATA TTCGCAAAGA CGCAGCGCGT TTTGAAAGCA TTAGCGCGCG TATTCCTGCG
GGGCGTTGGG GCGAGCCTGA TGACTTAACG GGTGCTGCGG TGTTTTTAGC AAGTAATGCA
TCTAATTATG TGAATGGCCA CATAATGTTG GTAGATGGTG GTTGGATGGC GCGTTAA
 
Protein sequence
MSEVFFKEMF GLNGKVAIVT GATRGLGQAM ALALAKAGAS VVAVGSKLEN LESTMALLAE 
YDVPTLALAC DQTKPAAITQ VVTDTVEKFG RIDVLINNAG TIRRAPAVDF SDDDWENVIE
TNLNGVFRFC RAVGKVMLEQ RSGKIINIAS LLSFSGGLTV PAYAASKGGV AQLTKALANE
WAASNVQINA IAPGYFNTDN TENIRKDAAR FESISARIPA GRWGEPDDLT GAAVFLASNA
SNYVNGHIML VDGGWMAR