| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1268 |
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| Symbol | |
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| ID | 3965250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1625446 |
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| End bp | 1626429 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920342 |
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| Product | carbon storage regulator |
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| Protein accession | YP_526742 |
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| Protein GI | 90020915 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0141406 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCGTTTT TTAAAACTAC GCGCCTACTA CTAACCGCTA TCACAACCCT CGCGTTTACC
GCCTGCGCGA TAGATGAAGA CACCACGACG CTTCGCGTTG CTCACACGCT GGACACGCAC
CACCCAGTCC ATAAAGCCAT GCAGTATATG GATGAAAGGT TGAGCTTACA TTCCGGCGGC
AAAATGCGAT TGGCGCTGTA CCCATCCGGC CAACTTGGTT CCGAGCGGGA AGTTATTGAG
TTGCTACAAA TTGGCAGCCT AAGCATGACT AAAGTGTCTG CTAGCTCCAT AGAAGCGTTT
GTGCCAGAAA TGAAAGTGTT TGGCCTACCG TACCTTTTTA ACGACAGCAC CCATTTTTGG
AACGTATTAA ATGGGGAAAT TGGCGAGCAA TTATTAGAAT CCGGTGTACC GTTTAGAATT
AGAGGCCTTG GCTATTTCGA TGCGGGTAGC CGCAGCTTTT ATTCTACAAA TAAACAAATA
ATTACCCCCG ACGATTTACC CGGCATGAAA ATTCGGGTGC TTAGCAGCCC TTCCGCTATT
GCCATGGTAA AAGCGATGGG CGGCTCTGCT ACACCTATAT CCTGGAGCGA GCTATATACC
TCGTTGCAAC AGGGCGTAGT AGATGGTGCA GAAAACAACC TGCCCAGCTT TTACCTTTCC
AAACATTACG AAGTATGTAA ATACCTTATT TTAGACGAAC ACACCGCCAT TCCAGACGTG
CTAATTATTG GCACTCACAC TTGGGATAAC CTAAGCCCGC AACAACAACA GTGGCTGTCA
CTCGCCATGA AAGAAGCCAC CGTTTACCAG CGCACGCTCT GGGAGCAAGC CAGTGCAGAA
GCGTTAGCCG CAGTAAAAGC AGCTGGGGTA ACGGTTATTC CCGCGCAAAA AGAGCTTTTT
CAACAAAGCG TACAAGCACT TATAGAAGCA CAAACCAAAA CTGAGCTAGG CCCAATTATT
AAAAAAATTA GAGATACCGA GTAA
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| Protein sequence | MPFFKTTRLL LTAITTLAFT ACAIDEDTTT LRVAHTLDTH HPVHKAMQYM DERLSLHSGG
KMRLALYPSG QLGSEREVIE LLQIGSLSMT KVSASSIEAF VPEMKVFGLP YLFNDSTHFW
NVLNGEIGEQ LLESGVPFRI RGLGYFDAGS RSFYSTNKQI ITPDDLPGMK IRVLSSPSAI
AMVKAMGGSA TPISWSELYT SLQQGVVDGA ENNLPSFYLS KHYEVCKYLI LDEHTAIPDV
LIIGTHTWDN LSPQQQQWLS LAMKEATVYQ RTLWEQASAE ALAAVKAAGV TVIPAQKELF
QQSVQALIEA QTKTELGPII KKIRDTE
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