| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1264 |
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| Symbol | |
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| ID | 3965246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1619516 |
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| End bp | 1622287 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920338 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_526738 |
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| Protein GI | 90020911 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000254862 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000223641 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACGAGCT TTCAGACTCC GTTCAAACGA AACATTATGT CCGCCTCCGT TATCGCTGCC
GTTAGTATGG GGGCGCAAGC ACAAACCACC CAGCCAAATG AGATTATTCT CGAAGACGTT
ATCGTTACCG GTATTCGAGC GTCCCTTACT GGGGCCATGG ATATTAAACG CAACGCAACG
GGCGTTGTGG ATGCAATTAG TGCAGAAGAT ATTGGTAAGT TTCCCGATAC CAACTTGGCT
GAATCACTCC AAAGAATTAC CGGTGTTGCT ATTGATCGCA GCAACAACGA AGGCAATCAA
GTAACCGTTC GCGGATTTGG CCCAAGCTTT AACCTCGTTA TGCTAAATGG CCGCCAGATG
CCCAACTCTT CGGCTTTGTC ATCTACAGCG GTTTCCCGCA GTTTCAATTT TCGCGAAATT
GCCGCTGAAT CTGTATCGCG TGTAGAGGTA TACAAAACAG GTAAAGCTCA TGTGCCAAGC
GGTGGTTTGG GTGCAACAAT AAATTTACAA ACCGCAAAAC CCTTTGATTT TGATGGCTTT
ACCTTACTTG GCAGCACCAA AGGCATCATT GAGTCAAACG CTAGTGGCGG CAACAATGTC
ACACCAGAAG TATCAGGCAT GGTGAGCCAA ATATTTGGTG ACGACTCTTT TGGCATACTG
GCATCTTTTT CTCATGCGCA GCGTGATTTT CACGTAGATC GTATTGGCAC GGCGAACGGC
TGGAGCCAAA GCTACCCTGC ACAATCCAAC CCCGATACTT CGGCCATTAA CACAAACCTT
AACCCAAGCC TCACCACATG GCGGGTAGCC ACAGTTGATT TAGATAACGC CGACTACGAG
CGCACTCGCC AGAACGGCCA AATAGTTTTG CAATACTTTC CCGACGACGA CTTTAGCGCA
AGTGTGGATT ACACCATGTC GCGCTTTGAA GAAAACGGCC AAATGAACCG AATGAGCTTT
TGGTTTGATG ACGTAGAAAC AGGTAAAGCC GACGCAAACG GTACTATTAT TAACCCTGCA
CGCTCTAACG ACGAACTTAA CTTCTGGGCG TGGGAATACG GGTTTACAAC AGAGAACGAT
TCATTTGGTT TAAATATAGA TTGGGCTGCA ACAGAAACAA TTAAACTCGT ATTAGATGCA
CACTCTTCTA AATCTCACTC AAACCCCGGC GCACAACCGG CAGAGCGTAT AGCCAACCTA
AAAAATCCGT TTGGTGATGC CGCACCCGTA CATATTTCTG CAGACTTCTC TGGCAAGCTA
CCTACGGTTG CCTACGACGA TTCCGCACTC GTTGGTGGCG CCTATTCGCG CGAAAATATC
GAAGCGGATT TATACCAAGA ACGCGGCAAC GAAGTAGAAA ATACTGTCGA TCAAATTCAA
TTTTCTGGTG AATGGGTTAA CCCCAACGAG AGCGTGCTGC GCCAAATAAA TTTCGGTTTC
GCAAGCATCA CCAACTCGGT AGATACACTA AGCATTCACA GCTCCAATTT CTCTTTGGGT
AACGGTGCAG TCGACATCAG CGATTTAGAC CTAACTTTTA GCCCTGGCGA TATCGGCTAT
GAATTTGTAC CCAATTACAG CGCAAACCAA TTTTTAAACT TGGTTGAAGA GCAAGGCCTT
AAAAATCCCG CCACGCTAGA TGAAAACGGC ATTGAAGAAA GTATTTCTGC TTTGTACCTA
TCGTTAGATC TCGAAACAGA CATTCGAGAT ATGCTATTGC GCACAAACAT TGGCGTGCGC
TACGAAACCA CCACAGTAAA CACCTACAGC AAAGGCAAGC CAGTAATAGG TTTTAACTGG
GTTTCGCCAC TCGAGCTAGC AAAAATTGTT GCGGATGAAG CGGTTACTCG CACCGCAGAT
GCAGATTACA ACCACGTATT ACCCAACTTA GATATAAGCT TAGATATTGT TGAAGACGTT
ATCGCGCGTT TATCTTACAG TACAACAATT GCGCGCAGTA ACATCGATGC AATGTACCCC
AATGTTACTT ACTATTCCCA CCAACCTAAC GGGCCATTTA CAGCAAGCCA AGGCAATGCC
GCGCTGCTTC CGTTCGACTC CGCGAACCTC GACTTTTCTC TTGAGTGGTA CTACGCCGAC
GGCAGCTACA TTTCTGGTGG TTACTTTAGC AAAAACGTCG ACAACTTCTT GGCTGCAGGG
CAAGAGCTGC AAACCATTAT TGGGCCAGAA GGGCCGCTTA CTAACCCCAG CGCTAATCCA
CGCCCTGGTT GCCCAGCGGG TAGCGTGAGC GAGCCAGTAG AAGCATGTAC TTCACAACCT
TCCGACCCCG AAATTATTTG GGGAATTGCC ACACCAAAAA ATACCGACGA ATCATTGGTA
GATGGCTGGG AATTGAACGT ACAGCACATG TTTGGCCAAT CTGGCTTTGG TGCAATTTTG
AATTACACCA CAGTAGATAG CAACGACCGC TACGATGTGT ACGCCATTGA AAACGGGCTA
GCACTACAAG GCCTAAGCGA TACCGCTAAC CTTGTTGCCT TCTACGAAAA AAACGGCTTA
CAACTCCGGG TGGCCTATAA CTGGCGTGAT AAATTCTTGC TAGCTTCTGG CCCAGAGCCC
ACATTTACAG CGGCTTACTC GCAAGTAGAC TTTAATGCGA GTTACGATAT TAATGAAAAC
CTCACCGTAT TTATTGAGGG CCTAAACCTT ACAGACGAAG CCACCCACCG CTATGGCCGC
TGGGAAAACC AATTGAAGGA CTACGAACAG TATGGCCAAC GCTATGCCTT AGGTATTCGT
GCCAAACTAT GA
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| Protein sequence | MTSFQTPFKR NIMSASVIAA VSMGAQAQTT QPNEIILEDV IVTGIRASLT GAMDIKRNAT
GVVDAISAED IGKFPDTNLA ESLQRITGVA IDRSNNEGNQ VTVRGFGPSF NLVMLNGRQM
PNSSALSSTA VSRSFNFREI AAESVSRVEV YKTGKAHVPS GGLGATINLQ TAKPFDFDGF
TLLGSTKGII ESNASGGNNV TPEVSGMVSQ IFGDDSFGIL ASFSHAQRDF HVDRIGTANG
WSQSYPAQSN PDTSAINTNL NPSLTTWRVA TVDLDNADYE RTRQNGQIVL QYFPDDDFSA
SVDYTMSRFE ENGQMNRMSF WFDDVETGKA DANGTIINPA RSNDELNFWA WEYGFTTEND
SFGLNIDWAA TETIKLVLDA HSSKSHSNPG AQPAERIANL KNPFGDAAPV HISADFSGKL
PTVAYDDSAL VGGAYSRENI EADLYQERGN EVENTVDQIQ FSGEWVNPNE SVLRQINFGF
ASITNSVDTL SIHSSNFSLG NGAVDISDLD LTFSPGDIGY EFVPNYSANQ FLNLVEEQGL
KNPATLDENG IEESISALYL SLDLETDIRD MLLRTNIGVR YETTTVNTYS KGKPVIGFNW
VSPLELAKIV ADEAVTRTAD ADYNHVLPNL DISLDIVEDV IARLSYSTTI ARSNIDAMYP
NVTYYSHQPN GPFTASQGNA ALLPFDSANL DFSLEWYYAD GSYISGGYFS KNVDNFLAAG
QELQTIIGPE GPLTNPSANP RPGCPAGSVS EPVEACTSQP SDPEIIWGIA TPKNTDESLV
DGWELNVQHM FGQSGFGAIL NYTTVDSNDR YDVYAIENGL ALQGLSDTAN LVAFYEKNGL
QLRVAYNWRD KFLLASGPEP TFTAAYSQVD FNASYDINEN LTVFIEGLNL TDEATHRYGR
WENQLKDYEQ YGQRYALGIR AKL
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