| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1259 |
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| Symbol | |
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| ID | 3965241 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1611601 |
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| End bp | 1612362 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637920333 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_526733 |
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| Protein GI | 90020906 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG5285] Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000199096 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGTGCAC TTAGGTTAAC CCCCGAGCAA CAAACGGCGT ATCACCGAGA TGGTTATGTG
ATTGCTTCTG GCTTTTTCTC ACTACAAGAA ATTACACGCC TGCAAGATCT GGCGTTTAAT
GATGAAACAC TTTACGAGCG AGCTTGGAAT AAAAAAGATG GCTCTGGCAA GGTGAGTAAG
GTGTGCTTGT GGCAACAAAC AGGCGATGAT TTTTACAGTA TGTTTTCTCG CAGTAAGCGG
TTGGCTGAGA GCGTAGAAAA ATTAATAGGT GAGCCTATTT ACCACACCAG CACTAAAATA
ATGATGAAGG AGCCATTTGT AGGTGGCGCG TGGGAATGGC ATCAAGATTT TGGTTATTGG
CACCGCGATA ATTTAATGCT CTACCCAAAA GCTGTGAGCT GTATGGTGGC CATTAACAAA
GCCACTATAG AAAATGGATG CCTGCAAGTA TTAAAAGGTT CGCACCATAT TGGCCGTTTA
GATCACAGCA AAACCGGTGA TCAAAAGGGG GCAGATATGT TATTTGTGGA AGAGGCTATG
AAGCACCACG AACTTGTAAA CGTAGAGCTT GAGCCTGGTG ATGTTTTATT TTTTCATTGC
AATTTATTAC ATAAGTCTAA TCAAAATCAA TCTGCTGCAC CGCGTTGGTC AATGATCTGT
GCGTATAACG CGATATCTAA CCAAGCATTT ATGGAGAATG AAGCCGTTTA TTACCCGTTC
TCTACGGTTG AAGACACCGC AATTTTAGAT TGGCAAGCGT AG
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| Protein sequence | MSALRLTPEQ QTAYHRDGYV IASGFFSLQE ITRLQDLAFN DETLYERAWN KKDGSGKVSK
VCLWQQTGDD FYSMFSRSKR LAESVEKLIG EPIYHTSTKI MMKEPFVGGA WEWHQDFGYW
HRDNLMLYPK AVSCMVAINK ATIENGCLQV LKGSHHIGRL DHSKTGDQKG ADMLFVEEAM
KHHELVNVEL EPGDVLFFHC NLLHKSNQNQ SAAPRWSMIC AYNAISNQAF MENEAVYYPF
STVEDTAILD WQA
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