Gene Sde_1237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1237 
Symbol 
ID3968198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1586968 
End bp1588257 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content50% 
IMG OID637920311 
ProductGntR family transcriptional regulator 
Protein accessionYP_526711 
Protein GI90020884 
COG category[D] Cell cycle control, cell division, chromosome partitioning 
COG ID[COG0037] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 
TIGRFAM ID[TIGR02432] tRNA(Ile)-lysidine synthetase, N-terminal domain
[TIGR02433] tRNA(Ile)-lysidine synthetase, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAAA TAGAACGCGA AATTTCTGCC CAAATAACTG CGCTTTCGCC GCAAGCGTGC 
GTGTGGGTGG CGTTCAGTGG TGGACTCGAT TCTACCGTGC TGCTGCATGC CCTATCTGTT
TTGGGGGTTA AATGCCATGC GGTACATGTT AATCATGGCT TATCTATTAA TGCAGATAAT
TGGCAGCGCC AGTGCAGTGT GTTTGCATCG CAGCGCGAAA TTGCTTTCAC GGCGGTTAAA
GTGATTGTAT CGGCTGAAGG TCGCGGTATA GAAGAGGCGG CGCGTGTAGC GCGCTATAAC
GCGATAGAGA ATTTACTCGC ACCCAGCGAT GTATTGCTTA CGGGGCATCA CCGCGACGAT
CAAATAGAAA CGTTTTTTTT GCGTTTAATG CGCGGGGCTG GTTTGCGCGG CTTGGGGGCA
ATGCGGCGCA CACGCTCGCT CAGTCAGGCA ATACTTGTAC GGCCACTGCT AAATATTAGT
CGGCAATCAT TGCACGAATA TGCCCTGCAA CAGGGGTTAA CTTGGATAGA AGACGAGAGT
AACTTAGATA CGCATTACGA CAGAAACCTA TTGCGTCAAA CCTTTGTACC GCAACTTAAG
GCGCGTTGGC CGCAAGTTGA AAAAAACGTA GAAACTACTG TGCAACACTT ACAGGCAGCA
GAAGATTTAT TGCAAGAATA TGCCGCCGCT GATCTAGCAC TCTGCGAAAG CAGGCAAGAG
CGACTAGGCT GCAGTATTGC GTTAAACCCG ATGCGGGCGT TCTCGACAGA GCGTACCAGC
CATATTTTAC GCAGCTGGCT TGCAAGCTTA GGTTACAAAT TACCAGACAC TGCGCGCATG
GTTGAGCTGC ATAAAATAAT CGCTGCAAAA GACGATGCAG CACCGCTATT GAATATTGGT
GATTACAGCT TGTGTCGTTT TCAGCAACGG CTGTACTGTT TGCCGCGCAC TGCAATCGAA
ACGGATTGCG CGCCACATAC TTGGAACCCT ATTGAGCCAC TGCATGCCGC AGATGGTAGT
GAGCTGCGGT TTACTGCTGC AAGCGACAAC ATGCCGGTTT TTGAGGTGGC TTACCGTCAA
GGGGGGGAGC GCTGCAAGCC CGTGGGGCGA GGGCATTCGC AAACCCTCAA AAAACTATTG
CAGGAATACG GTCTGGAACC CTGGCTTAGG GCTAAGGTGC CGCTTATTTA CTATCAAGGT
AACCTTATTG CCGTGGGGGA CTTGTGGTTG TGCGAAACCG AAACAGGTAA GGGGGTAGAA
GGGCATTTTG AATGGGGCTA TTTTGAATGA
 
Protein sequence
MNEIEREISA QITALSPQAC VWVAFSGGLD STVLLHALSV LGVKCHAVHV NHGLSINADN 
WQRQCSVFAS QREIAFTAVK VIVSAEGRGI EEAARVARYN AIENLLAPSD VLLTGHHRDD
QIETFFLRLM RGAGLRGLGA MRRTRSLSQA ILVRPLLNIS RQSLHEYALQ QGLTWIEDES
NLDTHYDRNL LRQTFVPQLK ARWPQVEKNV ETTVQHLQAA EDLLQEYAAA DLALCESRQE
RLGCSIALNP MRAFSTERTS HILRSWLASL GYKLPDTARM VELHKIIAAK DDAAPLLNIG
DYSLCRFQQR LYCLPRTAIE TDCAPHTWNP IEPLHAADGS ELRFTAASDN MPVFEVAYRQ
GGERCKPVGR GHSQTLKKLL QEYGLEPWLR AKVPLIYYQG NLIAVGDLWL CETETGKGVE
GHFEWGYFE