| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1222 |
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| Symbol | |
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| ID | 3968007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1569048 |
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| End bp | 1570580 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920296 |
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| Product | spermidine synthase |
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| Protein accession | YP_526696 |
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| Protein GI | 90020869 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00106657 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACAC CACTTACCGA TATAAACGCT AAACAAGCTG GCGTACTACT TTTCTCTATT
CTTATTGTTG CCCTATGCGG CATTGTTTAC GAATTAATTA TAGGCACTGT ATCCAGCTAC
CTATTGGGTA ACAGCGTGCA CCAATTCTCG CTCACCATTG GCTTTTTTAT GTTTGCCATG
GGTGTGGGCT CGATGATTTC TAAATACTTT GACGATCAGT TTGTACGTAA CTTTATTTTC
GTCGAAATTG CTATCGCACT TGTGGGCGGC ATTTGCAGTA TTTTGCTTTT TATAGCCTTC
CCAATGGCGC GCGCCCTGTA CGAACTGGTG ATGTATAGCC TAATTTTAAT TATCGGTGCG
CTCGTGGGAA TGGAGATTCC AATACTCACA TCTCTACTTG CGCAAAAAAG AAGCTTAAAA
GAATCGATAG CCAATGTTAT GTCGCTAGAT TACGTTGGCG CACTTATTGG CTCAGTTTCG
TTCCCCCTAC TGCTATTGCC CTCACTGGGG CTAGTGCAAT CTTCATTTGC TATTGGCTTA
ATTAATATTC TTGTAGCAAC AATAAACGTT ATTGTATTCC GGCACTACCT GCGGCACTAC
CACGCTATGC TATTAAGCTG TATTGGCATT TTAGTGTTGC TTACCGGCTG TATTTTTTAC
GGCACAGTGC TTACCCGCTT TGCAGAAAAA CATTTGTACT TTGACCAAGT AATTTATTCC
ACTCAAACCC CATACCAGAA ACTGGTGGTA ACGCGCTCTA CCACCACGCG TGAACAACGC
TTGTATATAG ATGGCCACAT CCAATTTTCT TCGCGGGACG AATACCGCTA CCACGAATAC
TTAGTGCACC CAGTTATGTC TATTCCCGGG CCGCGTAAAA ATGTACTTAT TCTTGGTGGT
GGCGATGGTC TAGCCGCGCG GGAAGTATTG AAATACGACG ATGTAGAAAC AATTCACTTG
GTGGATATCG ACCCCGAAAT GCTGCGCATA GCAAACGAAT TGCCCATGCT GCGCAGGTTG
AACAAAGGCA GCCTCGACGC CGAAAAGCTC ACAGCGTTTA GCCAAGATGC GTTTAGCTTT
ATCAATGAAC CCGGCATCGA TTACGACCGC GTAATTATAG ATATGCCCGA CCCGCACAAT
GAGGCAATTA ACAAGCTGTA TTCGCGCGAG TTTTACACCA TGATAAAACG CCGTATGACA
CCAGAGGGCA TTTTAGTCAG CCAAAGCTCA TCACCCTTTT TTACCCGCCA CGTATTTTGG
TGTATAGAAC AAACATTAGA TCACGTGTTC GACAATACAC TTAGCTACCA CACTGCATTG
CCTTCATTTG GTATTTGGGG GTTTAATATG GCGAGAAATA ACGTGGCGTT TCCTGCAGAT
ATTGAGTTTA ATATTGAGAC CAGAGCATTA ACGCAAGCAA GTATGCAGGC GGCAAGAAAC
TTTGATAAAG ATATAGCTAA GGTTGAAACA ACAGTGAACT CTATTATGGA GCCCAAGCTC
TACCACTTAT ATATAGAAGA CCTGCGCCGT TAA
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| Protein sequence | MKTPLTDINA KQAGVLLFSI LIVALCGIVY ELIIGTVSSY LLGNSVHQFS LTIGFFMFAM
GVGSMISKYF DDQFVRNFIF VEIAIALVGG ICSILLFIAF PMARALYELV MYSLILIIGA
LVGMEIPILT SLLAQKRSLK ESIANVMSLD YVGALIGSVS FPLLLLPSLG LVQSSFAIGL
INILVATINV IVFRHYLRHY HAMLLSCIGI LVLLTGCIFY GTVLTRFAEK HLYFDQVIYS
TQTPYQKLVV TRSTTTREQR LYIDGHIQFS SRDEYRYHEY LVHPVMSIPG PRKNVLILGG
GDGLAAREVL KYDDVETIHL VDIDPEMLRI ANELPMLRRL NKGSLDAEKL TAFSQDAFSF
INEPGIDYDR VIIDMPDPHN EAINKLYSRE FYTMIKRRMT PEGILVSQSS SPFFTRHVFW
CIEQTLDHVF DNTLSYHTAL PSFGIWGFNM ARNNVAFPAD IEFNIETRAL TQASMQAARN
FDKDIAKVET TVNSIMEPKL YHLYIEDLRR
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