| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1219 |
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| Symbol | |
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| ID | 3968004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1566451 |
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| End bp | 1567293 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637920293 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_526693 |
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| Protein GI | 90020866 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.370987 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCCG ACAAAAAAAT AATCTTTATT ACAGGTTGCT CCACAGGTAT TGGTTTCTGT
GCGGCCAAAA CCCTAGTTGA GCGCGGTTAT CATGTGATTG CCGGTGTGCG AAAACTGGCT
AGCGCTGATG CTCTGCGCGA AGTGAATGTT GAAGATACAG TTGAGATAGA TTTGGCTAGC
TCACAATCAA TCGAGCGCGC GGTGCAGCAA GTGTTGGCGA TAAGTAAGGG CAATTTATAC
GCACTGTTCA ACAACGCCGC TTACGGCCAA CCGGGGGCGG TAGAAGATTT AACCCGCGAT
ACGTTACGCA AGCAGTTTGA AACCAACTTT TTTGGCACCC ACGAGCTCAC GATAAAATTA
CTGCCCACTT TGCTGCAGCA AAAAGATGCG CGTTTAATTC AAAACAGCTC GATATTGGGC
TTTGCGGCGA TGCCTATGCG CGGCGCCTAT AACGCTTCTA AATTTGCGCT AGAAGGCTTA
ACTGATACCT TGCGCTTGGA GTTGGCTGGG TCGAGTTTAA AAATTAGCCT TATAGAGCCG
GGGCCAATTG AGTCACACTT CAGAAAAAAT GCGCTAGTAG CGCTGGAAGA AAACGTAGAT
ATACACAACA CTCGCCATAG CAAAATGTAT AAAACCGCTA TTGAGCGCTT GCGCAAAGTG
GGGCCTGCGG CGCCATTCAC CTTGCCAGCG GACGCAGTGG TCGCAAAATT AATTCATGCA
TTAGAAAGTC GCAGGCCAAA ACAACGATAT TTTGTTACGG TGCCAACATA CGCCATGGCA
ATATTAAAAG TGTTGTTGCC GGGCCGTTGG ATGGATTATG TATTACGTAA AGCGGGCAGC
TAG
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| Protein sequence | MAADKKIIFI TGCSTGIGFC AAKTLVERGY HVIAGVRKLA SADALREVNV EDTVEIDLAS
SQSIERAVQQ VLAISKGNLY ALFNNAAYGQ PGAVEDLTRD TLRKQFETNF FGTHELTIKL
LPTLLQQKDA RLIQNSSILG FAAMPMRGAY NASKFALEGL TDTLRLELAG SSLKISLIEP
GPIESHFRKN ALVALEENVD IHNTRHSKMY KTAIERLRKV GPAAPFTLPA DAVVAKLIHA
LESRRPKQRY FVTVPTYAMA ILKVLLPGRW MDYVLRKAGS
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