| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1218 |
|---|
| Symbol | |
|---|
| ID | 3968003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1565787 |
|---|
| End bp | 1566443 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920292 |
|---|
| Product | uracil-DNA glycosylase |
|---|
| Protein accession | YP_526692 |
|---|
| Protein GI | 90020865 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0692] Uracil DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00628] uracil-DNA glycosylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.145482 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAA TAGGGCAAGA GTTTGAGCAG CCCTACATGG CAGAGTTAAA AGCATTTTTG
CTTCGCGAAA AAAAAGCAGG TAAAACTATT TACCCCGCAG GCGAAAACAT TTTTAACGCA
CTAAATACCA CGCCTTTTGA GCACGTAAAA GTAGTAATTC TCGGGCAAGA CCCGTACCAC
GGCCCTGGCC AAGCCCACGG GCTGTGTTTT TCTGTATTGC CAGGCGTGCG CTTTCCGCCG
TCGCTTCTGA ATATTTTCAA AGAAATTCAC AACGATTTGG GGTTTGATAT TCCAAGCCAC
GGTTGTTTGC AGTCCTGGGC TGAGCAGGGG GTGTTACTGT TAAATGCCAC CTTGACTGTC
GAGCAGGCCA AAGCTGGGTC GCATCAGGGT AAGGGGTGGG AAACTTTTAC CGACGCAGTT
ATAGGGGCTT TGAATAATCA TCGCGAAGGT ATCGTTTTTT TATTGTGGGG TAGCTATGCA
CATAAAAAAG GTAACATTAT CGATACCACA CGGCACCATG TACTTAAATC TGTGCACCCA
TCACCGCTTT CTGCGCACCG TGGTTTTTTT GGTAATAGCC ACTTTTCGCA AGCGAATAAA
TTTTTAGCAC AGCAAGGTCT CACCGAAATA GATTGGCGTG TGCCCCCAAG TGAGTAA
|
|---|
| Protein sequence | MQQIGQEFEQ PYMAELKAFL LREKKAGKTI YPAGENIFNA LNTTPFEHVK VVILGQDPYH
GPGQAHGLCF SVLPGVRFPP SLLNIFKEIH NDLGFDIPSH GCLQSWAEQG VLLLNATLTV
EQAKAGSHQG KGWETFTDAV IGALNNHREG IVFLLWGSYA HKKGNIIDTT RHHVLKSVHP
SPLSAHRGFF GNSHFSQANK FLAQQGLTEI DWRVPPSE
|
|---|
| |