| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1176 |
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| Symbol | |
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| ID | 3968615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1513741 |
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| End bp | 1516074 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920250 |
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| Product | agarase |
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| Protein accession | YP_526650 |
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| Protein GI | 90020823 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000515097 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000139638 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAAAATTT TTTCAGTTAA GAAAATGCTG GCCTGTGTTT TTATCGCCAC TTTAATTAAT
GCTTGTGCGG ATAAAGACGA GCCGCAAGCG ATAGCTTCCC AGCCTAGTGC CGAAGAGGGC
GCCCTCGACA ATGTGCTATT AGCAAACATG TTATGGGATT TTGATTCGGG TGACGTTACG
TCTGCAATCC AAACCGAAAA TACTACTGTG AAGATTGTGC CCAATTCTTC TGGGCGGGCT
TTGGAGGTAG AGCTACAAAC TAAAGCGCAT TACTCTGCCA ACTTAACCTT TGCCGCCGAT
GCGCCTTGGG ACTGGAGCGG GCTAGGGAAC TTTGCATTCG CTTTGGATAT TGCTAACCCC
AAACCAACAT CCGTTTATTT GCATGTGGTT GCTACAGACA GCCATGGAAA AGAACGTAAA
CGTGCCATTG CAATCCCAGG AAATTCCAGT GGTACTTATT ATTATGAGCT AAAGGGGCCA
GACGACGGTG TAGAAACCGG TATTCGCTCG AACCCGCCAA GTTGGAACAG TGACTATCAG
AATATGATTT ATCGCTGGGG CGATAAGCAG TTGGATGTTA GCTCACTGAA AAGCATCGCA
TTTACAGTAA CCGGCGTACT TGAAAATAAA ACACTTATCC TCGACAACGT ACGTTTAATT
CAGCCTAAAT CGATCGATGA AAACTACTTT AAAGGGCTGG TGGATGAGTT CGGTCAAAAC
GATAAATTAG AATTTGTTAA CAAGGTTCAA TCTGTTGAGC AATTGCGTAA GTTATCGGAA
GAAGAGCAAG CACAGTTGCG AACAACACCA CTTGATGGCC GCTCCATATT TGGTGGATGG
GCAGAGGGGC CGAAGCTTGA AGCGACAGGG TTTTTTCGTA CGCAAAAAGT TAACGGCAAA
TGGGCGTTGG TTGATCCGAG TGGTTACTTA TTTTTCTCTA CCGGTATTGC TAATGTTCGC
TTAGCAAACA CTTCTACTAT AACTGGCTAC GATTTCGATC AGTCTAAAAT CCCTCAGCGT
CAACCTGGTG ATTTAACGCC TGAAGATTCT CTAGGGCTTA ACCGTGCGCC GGATGCAGCC
CTACCTACAA GGCATATAAG TTCGCCGCTG CGAGCTGAAA TGTTCACTTG GTTACCTCAA
TATGACGAGC CGCTAGGGCT TAACTTTGGC TACCGACGCG AAGTGCATAC AGGGGCCATT
GAGCGGGGGG AGACGTTTAG CTTTTATCGC GCAAACCTAC AGCGAAAATA CGGCATAAGT
GACGAAGCGG CATTGATGGA AAAATGGCGA GAAACCACCG TGAATCGTAT GCTCTCTTGG
GGGTTCACCT CTTTTGGTAA TTGGATTGAC CCCGCTTATT ATCAAATGGA CCGTATTCCG
TACTTTGCGA ATGGTTGGAT TATTGGAAAT TTTAAAACAG TAAGCAGTGG CAATGATTAT
TGGAGCCCGT TGCCAGATCC ATTTGACCCG CTATTTAAAG AGCGGGCGTA TATTATAGCA
GAACAAATTG GCCGTGAGGT TAAAAATAAT CCTTGGTGTG TGGGTGTTTT TATCGATAAC
GAAAAAAGTT GGGGACAAGA AGGGGCAGTG CAAACGCAGT ACGGTCTTGT GATTAACACC
CTTAGTCGCG CAGCTGAAGA TAGCCCAACC AAAGCGCAGT TTGTAATGCT TATGCAGCAA
AAATATGGGG CTATTACCGA ACTAAATCGC GCTTGGAATG TTGAGCTAAA CAGTTGGCAA
GAATTTGCTA ATGGTGTTGT TCTAACCCAA TTTAGCGATG CTGTGGTTGC CGACCTCTCT
GTTATGTTGG AGCACTACGC CGGCCAATAT TTTAAAATTG TACGCGAAGC AGTTAAGCAT
TATTTACCAA ACCATATGTA CCTTGGCGCT CGCTTTGCAG ATTGGGGCAT GACACCGGAA
ATACGTCGTT CGGCTGCGAA ATATGCCGAT GTTGTAAGTT ACAACTATTA CAAAGAAGGC
GTAAGTAATA AATTCTGGCA CTTCTTAGAA GAGTTAGATA AGCCCAGTAT TATAGGGGAA
TTCCATAACG GTGCGTTGGA TTCTGGTTTG CTAAACCCCG GTGTAGTCCA CGCAAGCTCT
CAAGCTGATC GCGGTAAAAA ATATGCTGAG TATATGAACA GCGTGATAGA TAATCCGTAT
TTTGTTGGAG CCCATTGGTT TCAGTATATC GATTCGCCAC TTACCGGTCG CGCTTACGAT
GGTGAGAACT ACAATGTTGG TTTTGTAAGT ATTACGGATA TACCTTACAC CTCGCTTGTG
GACGCTGCGC GAGAAGTAAA TAAAGCACTA TATAGTCGAC GTTTTGGCGA GTAA
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| Protein sequence | MKIFSVKKML ACVFIATLIN ACADKDEPQA IASQPSAEEG ALDNVLLANM LWDFDSGDVT
SAIQTENTTV KIVPNSSGRA LEVELQTKAH YSANLTFAAD APWDWSGLGN FAFALDIANP
KPTSVYLHVV ATDSHGKERK RAIAIPGNSS GTYYYELKGP DDGVETGIRS NPPSWNSDYQ
NMIYRWGDKQ LDVSSLKSIA FTVTGVLENK TLILDNVRLI QPKSIDENYF KGLVDEFGQN
DKLEFVNKVQ SVEQLRKLSE EEQAQLRTTP LDGRSIFGGW AEGPKLEATG FFRTQKVNGK
WALVDPSGYL FFSTGIANVR LANTSTITGY DFDQSKIPQR QPGDLTPEDS LGLNRAPDAA
LPTRHISSPL RAEMFTWLPQ YDEPLGLNFG YRREVHTGAI ERGETFSFYR ANLQRKYGIS
DEAALMEKWR ETTVNRMLSW GFTSFGNWID PAYYQMDRIP YFANGWIIGN FKTVSSGNDY
WSPLPDPFDP LFKERAYIIA EQIGREVKNN PWCVGVFIDN EKSWGQEGAV QTQYGLVINT
LSRAAEDSPT KAQFVMLMQQ KYGAITELNR AWNVELNSWQ EFANGVVLTQ FSDAVVADLS
VMLEHYAGQY FKIVREAVKH YLPNHMYLGA RFADWGMTPE IRRSAAKYAD VVSYNYYKEG
VSNKFWHFLE ELDKPSIIGE FHNGALDSGL LNPGVVHASS QADRGKKYAE YMNSVIDNPY
FVGAHWFQYI DSPLTGRAYD GENYNVGFVS ITDIPYTSLV DAAREVNKAL YSRRFGE
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