Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1171 |
Symbol | |
ID | 3968436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1506188 |
End bp | 1506961 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637920244 |
Product | 16S rRNA processing protein RimM |
Protein accession | YP_526645 |
Protein GI | 90020818 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1682] ABC-type polysaccharide/polyol phosphate export systems, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 0.730617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000152208 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATGCTC AAGCACAGTT CGTAGCGCTA TCTACTATTG TTCGCAAAGA AGTTAGACGT TTTACCCGCA TTTGGATGCA AACGCTGTTG CCACCCGTTA TTACAATGGG CTTATATTTT ATTATTTTTG GCAACCTCAT CGGTTCACGC ATTGGGCAAA TGGGTGGTTT CGATTATATG GCCTTTGTGG TGCCGGGCCT TATTATGATG TCCGTTATTA ATAATTCTTA CTCAAATGTG GTGTCTTCTT TTTTTAGCGC GAAATTTACC AAAAGCATTG AAGAGCTACA GGTAAGCCCA ACGCCTAGCT ACATTATTAT GTTGGGGTAT GTGTCCGGTG GTGCGCTGCG CGGTTTGTTA GTGGGGGCGA TAGTAACGGG TGTGTCGCTA TTTTTTACCG ATATGCAAAT TAAGCATGTT GGCATTACGA TGCTTGTGGT GTTGCTTACT GCGATGCTAT TTGCGGTGGC GGGTATGATC AACGCTATTT TTGCTAAATC CTTTGACGAT ATTTCAATTA TCCCTACCTT TGTACTTACG CCAATGACGT ACTTAGGGGG TGTTTTTTAT TCTATCTCTC TACTGCCCGA GTTTTGGCAG GGTGTATCTA AGCTCAACCC CATTTTGTAT ATGGTGAATG CTTTCCGTTA TGGGGTGTTG GGTGTATCGG ACGTAAGTAT TGCGGGTTCT TTAGCTGGCA TATTTGTATT TTTATGTATC GCCGTGGTTT ATTGTTTGTA TTTGTTGGAA AGCGGCAAAA AACTGCGCAA TTAG
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Protein sequence | MNAQAQFVAL STIVRKEVRR FTRIWMQTLL PPVITMGLYF IIFGNLIGSR IGQMGGFDYM AFVVPGLIMM SVINNSYSNV VSSFFSAKFT KSIEELQVSP TPSYIIMLGY VSGGALRGLL VGAIVTGVSL FFTDMQIKHV GITMLVVLLT AMLFAVAGMI NAIFAKSFDD ISIIPTFVLT PMTYLGGVFY SISLLPEFWQ GVSKLNPILY MVNAFRYGVL GVSDVSIAGS LAGIFVFLCI AVVYCLYLLE SGKKLRN
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