Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1164 |
Symbol | |
ID | 3968427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1499898 |
End bp | 1501169 |
Gene Length | 1272 bp |
Protein Length | 423 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637920235 |
Product | aminotransferase AlaT |
Protein accession | YP_526638 |
Protein GI | 90020811 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000136093 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACACTGC CGAAAGACCC CGAGTCGTCC ACGGTTAAAC CGGTGAAAAA GGACAAGCGC AAAAACATCA TTAAATCTGA AAAGCTACTA GGCGTATGCT ACGACATTCG CGGCCCAGTG CTTGAGCACG CCAACCGCCT TGAAGAAGAA GGCCACCGCA TATTGAAGTT AAACATTGGC AACCCAGCAC CTTTTGGTTT TGAAGCGCCA GATGAAATTA TCACCGATGT GGTTTATAAC ATTCGCGAGG CGCAGGGCTA TACCGCATCG CGCGGCTTGT TCCCCGCACG CAAAGCCATC ATGCACGAGT GCCAACGCCA GGAAATACCC AACGTAGAAA TAGAAGATAT CTTCTTGGGC AACGGCGTAT CAGAACTTAT TGTTATGGCC AACCAGGCCC TGCTTAACAA TGGTGATGAA GTACTTGTTC CCTCACCAGA CTACCCTCTG TGGACCGCCG CTGTGAACCT CGCTGGGGGC AAAGCAGTGC ACTACATGTG CGACGAGCAG TCGGACTGGT TCCCCGATAT AGATGATATG CGCAGTAAAA TAACCAGCCG CACACGTGCA ATAGTGGTTA TAAACCCAAA CAACCCTACC GGCGCGGTAT ACAGCCAAGA GCTGTTAGAG CAAATTGTAG CGCTTGCACG CGAGCATCAA CTGGTGATTT TCGCCGACGA AATTTACAGC AAGATTCTGT ACGATGACGC CGAATTTGTG CCCATGGGGC GCATCGCAAA AGATGTGCTG TGCGTAACCT TTAACGGCTT GTCTAAATCT TACCGACTGG CGGGTTTCCG CTCGGGTTGG ATAATTCTAA GTGGTGCCAA GCACTTGGCA AAAGACTATA TTCGCGGCAT AGATATGCTG GCCTCTATGC GCCTGTGTGC CAACGTTCCC GCTATGCTGG CAGTGCAAAC AGCGCTTGGC GGCTACCAAA GTATTAATGA GCTAATCCTG CCGGGCGGAC GTTTGCTTGA GCAGCGCGAC GCGGCCATTG AAGAGCTAGC AAAAATACCA GGAGTAAGCT GTGTGGTGCC CAAAGGGGCA ATATACCTGT TCCCTAAAAT TGATCGCACC ATGTACGACT TTGATGACGA CCAACAGTTA ATATTAGATT TTCTAATTCA AGAGAAAATT CTGTTGGTGC AAGGTACTGC CTTCAACTGG AAGCAACCGG ACCACTTTAG AATTGTGTTT CTACCGCAAG CAGACCAATT GCGTCAGGCG ATTATTAAGT TTGGCGAGTT TTTGCAGCAA TACCGCATTT AA
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Protein sequence | MTLPKDPESS TVKPVKKDKR KNIIKSEKLL GVCYDIRGPV LEHANRLEEE GHRILKLNIG NPAPFGFEAP DEIITDVVYN IREAQGYTAS RGLFPARKAI MHECQRQEIP NVEIEDIFLG NGVSELIVMA NQALLNNGDE VLVPSPDYPL WTAAVNLAGG KAVHYMCDEQ SDWFPDIDDM RSKITSRTRA IVVINPNNPT GAVYSQELLE QIVALAREHQ LVIFADEIYS KILYDDAEFV PMGRIAKDVL CVTFNGLSKS YRLAGFRSGW IILSGAKHLA KDYIRGIDML ASMRLCANVP AMLAVQTALG GYQSINELIL PGGRLLEQRD AAIEELAKIP GVSCVVPKGA IYLFPKIDRT MYDFDDDQQL ILDFLIQEKI LLVQGTAFNW KQPDHFRIVF LPQADQLRQA IIKFGEFLQQ YRI
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