Gene Sde_1162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1162 
Symbol 
ID3968425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1497555 
End bp1499318 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content44% 
IMG OID637920233 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_526636 
Protein GI90020809 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000913114 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAGCAACG AAGCGCTATA CATTGTCATT GCCCTACTTG CAGCATTTGC TAGCTTAATG 
GCGTATATGC TTTTCACTAA AAAAGCACCG GAAGACAACC AGCCCATTAC AGATACAACC
GACCCTTTTG CGCTGTACCT AGGCAACGCG GTGTGTGGCG CGGTAGTGCT AGATGCCTCG
CTTAAAATAG CTCAAATAAA CACCGTGCTT TGCGAGTATT TGGGGCTCAC CCCAGCAGCA
GTAATAGGCA CACTGTTTAG CAAACATATT GCCAGCGCCG ATCAAGCCAT ATGGCAGGAG
CTTACGGCCC ATTCGGATGC TTCGGGTAGC ACAGCTCAAA TTGCGCTGCT GACAGCAAAC
AACAAACAAA TTCAAGGCAA ACTAAGCCTA CAAGCCATAC CCGCCAATCA AGAACTATTG
GTTACGTTCG AGAATCAACA CCAATTATTG CAATACGCAA CCGAAATAGA ATACAGAAAA
ACGCACGACG AACTCACAGG CCTTAACAAC CGCAAAGCAT TAGAGGCCTA CCTAAACAAA
ACCTTCGAAA GCCAATCTCT TTTTTCTAAG CCCATTGCTA TGATCTACAT TAATGTGGAT
CAACTTAAAG TTGTAAACGA TACCTGTGGC CATATTGCAG GTGACGAGCT GTTAAAACAA
CTTGTACACA TTCTTAAAAA CACAGATGTA ACCTACGATT ATTTAGCCCG TGTTGGCGGC
GACGAGTTCG CATTAATTAA AGAAGACGCC ACCATCGAGC AAGCTGAAGA AGTTGCCGAA
ATAATTCGCA GCACAGTAGA AGACATAAGC TTTAGCTGGG ATGATAAAAA CTTTCGCCAA
AGCTTAAGTA TTGGCGTTGC GTTATCCTCC CCACGTTTAT GTACTATTAC CGAAATTATT
GGCGCTGCCG ATGCAGCGTG CGAACAAGCA AAAGTAGCCG GTAAAAACCG GGTGCATGTC
CATAAAGATA CACGCGCGGC TTCAGAAGAT AGCCGCCATC AAATGCGTTG GGTTAGTCGC
ATTCAACAAG CTTTTATTGA AGATCGCTTC GAGTTATTTT TTCAACCAAT TGTTGCCTTA
CACCACAGCG ATCAATACGT ACACTACGAA CTACTTATCC GCTATCGCGA TGAGAACAAC
CGGTTTGTAT CGCCCAACGC TTTTTTACCC GCGGCAGAAA AGTACGGTTT ATCCACGCAA
ATTGATTTAT GGGTGCTCAC CACCGCGCTC GACTTTCTGG CGTCGAACCC TGAGCACACC
TATAAATTAC AATGCTGCTC TATTAATTTA TCTGCTCACT CTCTTTCTAG CCACCAAACG
CGCAGCGCTA TTGCTCAACT AATTATTGGC TGTGGCTTTC CGCCTGAAAA AGTCTGCTTC
GAAATTACAG AAACCAGCGC AATTAAAAAC TTAGATGAAG CAACGGCGTT TATTGAAGAA
ATGAAGCTAA TTGGCTGCCG GTTTGCTCTA GACGATTTTG GTACGGGCTT TTCATCCCTA
GGCTATTTAA AAAGTTTGAA TGTAGACTAT TTAAAGATAG ACGGTGCATT TATACGTAAT
ATTGTGCACG ACAAGATAGA TCACGCTATG GTGACGGCTG TCGCCAGCAT TGGCAAAGAA
ATGAATATTG CCACCATCGC TGAATTTGTA GAGAACGAAG AAATTAAATC AACACTGTCG
CAAATGGCAG TAGATTACGG TCAAGGTTTT GGTTTTGCCA AACCCATGCC GTTAAACGAT
GCCGTAGCCT ATTACAACAA ATAA
 
Protein sequence
MSNEALYIVI ALLAAFASLM AYMLFTKKAP EDNQPITDTT DPFALYLGNA VCGAVVLDAS 
LKIAQINTVL CEYLGLTPAA VIGTLFSKHI ASADQAIWQE LTAHSDASGS TAQIALLTAN
NKQIQGKLSL QAIPANQELL VTFENQHQLL QYATEIEYRK THDELTGLNN RKALEAYLNK
TFESQSLFSK PIAMIYINVD QLKVVNDTCG HIAGDELLKQ LVHILKNTDV TYDYLARVGG
DEFALIKEDA TIEQAEEVAE IIRSTVEDIS FSWDDKNFRQ SLSIGVALSS PRLCTITEII
GAADAACEQA KVAGKNRVHV HKDTRAASED SRHQMRWVSR IQQAFIEDRF ELFFQPIVAL
HHSDQYVHYE LLIRYRDENN RFVSPNAFLP AAEKYGLSTQ IDLWVLTTAL DFLASNPEHT
YKLQCCSINL SAHSLSSHQT RSAIAQLIIG CGFPPEKVCF EITETSAIKN LDEATAFIEE
MKLIGCRFAL DDFGTGFSSL GYLKSLNVDY LKIDGAFIRN IVHDKIDHAM VTAVASIGKE
MNIATIAEFV ENEEIKSTLS QMAVDYGQGF GFAKPMPLND AVAYYNK