Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1162 |
Symbol | |
ID | 3968425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1497555 |
End bp | 1499318 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637920233 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_526636 |
Protein GI | 90020809 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000913114 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAGCAACG AAGCGCTATA CATTGTCATT GCCCTACTTG CAGCATTTGC TAGCTTAATG GCGTATATGC TTTTCACTAA AAAAGCACCG GAAGACAACC AGCCCATTAC AGATACAACC GACCCTTTTG CGCTGTACCT AGGCAACGCG GTGTGTGGCG CGGTAGTGCT AGATGCCTCG CTTAAAATAG CTCAAATAAA CACCGTGCTT TGCGAGTATT TGGGGCTCAC CCCAGCAGCA GTAATAGGCA CACTGTTTAG CAAACATATT GCCAGCGCCG ATCAAGCCAT ATGGCAGGAG CTTACGGCCC ATTCGGATGC TTCGGGTAGC ACAGCTCAAA TTGCGCTGCT GACAGCAAAC AACAAACAAA TTCAAGGCAA ACTAAGCCTA CAAGCCATAC CCGCCAATCA AGAACTATTG GTTACGTTCG AGAATCAACA CCAATTATTG CAATACGCAA CCGAAATAGA ATACAGAAAA ACGCACGACG AACTCACAGG CCTTAACAAC CGCAAAGCAT TAGAGGCCTA CCTAAACAAA ACCTTCGAAA GCCAATCTCT TTTTTCTAAG CCCATTGCTA TGATCTACAT TAATGTGGAT CAACTTAAAG TTGTAAACGA TACCTGTGGC CATATTGCAG GTGACGAGCT GTTAAAACAA CTTGTACACA TTCTTAAAAA CACAGATGTA ACCTACGATT ATTTAGCCCG TGTTGGCGGC GACGAGTTCG CATTAATTAA AGAAGACGCC ACCATCGAGC AAGCTGAAGA AGTTGCCGAA ATAATTCGCA GCACAGTAGA AGACATAAGC TTTAGCTGGG ATGATAAAAA CTTTCGCCAA AGCTTAAGTA TTGGCGTTGC GTTATCCTCC CCACGTTTAT GTACTATTAC CGAAATTATT GGCGCTGCCG ATGCAGCGTG CGAACAAGCA AAAGTAGCCG GTAAAAACCG GGTGCATGTC CATAAAGATA CACGCGCGGC TTCAGAAGAT AGCCGCCATC AAATGCGTTG GGTTAGTCGC ATTCAACAAG CTTTTATTGA AGATCGCTTC GAGTTATTTT TTCAACCAAT TGTTGCCTTA CACCACAGCG ATCAATACGT ACACTACGAA CTACTTATCC GCTATCGCGA TGAGAACAAC CGGTTTGTAT CGCCCAACGC TTTTTTACCC GCGGCAGAAA AGTACGGTTT ATCCACGCAA ATTGATTTAT GGGTGCTCAC CACCGCGCTC GACTTTCTGG CGTCGAACCC TGAGCACACC TATAAATTAC AATGCTGCTC TATTAATTTA TCTGCTCACT CTCTTTCTAG CCACCAAACG CGCAGCGCTA TTGCTCAACT AATTATTGGC TGTGGCTTTC CGCCTGAAAA AGTCTGCTTC GAAATTACAG AAACCAGCGC AATTAAAAAC TTAGATGAAG CAACGGCGTT TATTGAAGAA ATGAAGCTAA TTGGCTGCCG GTTTGCTCTA GACGATTTTG GTACGGGCTT TTCATCCCTA GGCTATTTAA AAAGTTTGAA TGTAGACTAT TTAAAGATAG ACGGTGCATT TATACGTAAT ATTGTGCACG ACAAGATAGA TCACGCTATG GTGACGGCTG TCGCCAGCAT TGGCAAAGAA ATGAATATTG CCACCATCGC TGAATTTGTA GAGAACGAAG AAATTAAATC AACACTGTCG CAAATGGCAG TAGATTACGG TCAAGGTTTT GGTTTTGCCA AACCCATGCC GTTAAACGAT GCCGTAGCCT ATTACAACAA ATAA
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Protein sequence | MSNEALYIVI ALLAAFASLM AYMLFTKKAP EDNQPITDTT DPFALYLGNA VCGAVVLDAS LKIAQINTVL CEYLGLTPAA VIGTLFSKHI ASADQAIWQE LTAHSDASGS TAQIALLTAN NKQIQGKLSL QAIPANQELL VTFENQHQLL QYATEIEYRK THDELTGLNN RKALEAYLNK TFESQSLFSK PIAMIYINVD QLKVVNDTCG HIAGDELLKQ LVHILKNTDV TYDYLARVGG DEFALIKEDA TIEQAEEVAE IIRSTVEDIS FSWDDKNFRQ SLSIGVALSS PRLCTITEII GAADAACEQA KVAGKNRVHV HKDTRAASED SRHQMRWVSR IQQAFIEDRF ELFFQPIVAL HHSDQYVHYE LLIRYRDENN RFVSPNAFLP AAEKYGLSTQ IDLWVLTTAL DFLASNPEHT YKLQCCSINL SAHSLSSHQT RSAIAQLIIG CGFPPEKVCF EITETSAIKN LDEATAFIEE MKLIGCRFAL DDFGTGFSSL GYLKSLNVDY LKIDGAFIRN IVHDKIDHAM VTAVASIGKE MNIATIAEFV ENEEIKSTLS QMAVDYGQGF GFAKPMPLND AVAYYNK
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