| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1138 |
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| Symbol | |
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| ID | 3968325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1473946 |
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| End bp | 1475694 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920209 |
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| Product | type II secretory pathway, ATPase |
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| Protein accession | YP_526612 |
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| Protein GI | 90020785 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTAGAAC GCAAGCGCAT TCGGTTAGGG GATTTACTCG TCGCCCAACA GCTTATTACC
CAAGAGCAAC TCGAGTCGGC CCTTGGTGCA CAAAAAAATA CCGGCCGTAA GCTGGGGCGC
CAGCTTATAG AAATGGGGTT TGTAGAGGAA AATACTTTAC TTACCTTGCT CTCTAAACAG
CTGGAAATTC CCTTTGTTGA TTTAAAACAT TTTCGCTTCG AGCGCGAAGT AGTGCAAATT
TTGCCAGAAG TGCATGCTCG CCGGTACCGC GTTGTTGTAT TACAAGATGA CCCCGATGGT
ATTTTACTGG GTATGTCTGA CCCTACCGAT ATATTTGGTT TAGATGAGCT GCAAAAAATT
ATTACTAAGC CAATTAAGCC CGCGGTGGTA CGCGAGTCTG AATTACTGGA TGTGCTAGAT
AGCACCTACA GCCGCGCCAG TGAAATTGCA TCGCTTGCCG AACAGTTAGA TGACGAGCTT
GAAGAAGAGT CCGTCGACCT TTCCGATATT ATTACCGATG CCACAGACAG TGATGCACCC
ATAGTAAAGC TTCTGCAAAA AATATTTGAA GAAGCCATTA ATACCCGCGC ATCCGATGTG
CATATCGAAC CAGACGAGCA TGTGCTGCGA ATTAGGCAGC GAATAGATGG CGTGCTGGTC
GAGCAGGTTA TGAATGAAAA GCGTATTGCC GGTGCGCTAG TAGTGCGTTT GAAATTGATG
TCTAACTTAG ATATTTCTGA AAAACGTTTG CCGCAAGATG GCCGTTTTAA TTTAAAAGTT
AAAAATCACA ATATCGACGT GCGATTGTCT ACCATGCCGG TGCAGTTTGG TGAATCGGTT
GTAATGCGTA TTTTAGATCA CACCGAAGGC GTGCGTCCGC TAAACAAAGT GGGTATGCCA
GAGCATTACG TCAATCAGTT TCGTCACGTC ATTACCCGCC CGCACGGGCT GGTATTAGTT
ACCGGGCCGA CGGGTAGCGG TAAAACCACC ACGCTTTACG GCGCACTTTC CGAGCTTAAT
ACCTCTGAGA AAAAAATTAT TACGGTGGAA GACCCCGTCG AGTACCGTTT GCCACGTATT
AGCCAGGTGC AAGTACACGA AAAAATTGGT TTGGATTTTG GTTTAGTGTT GCGAGCCACC
TTGCGGCAAG ATCCAGACAT TCTACTTATT GGTGAGATTC GCGATGCCGA ATCTGCCGAG
ATAGCACTGC GTGCCGCAAT GACAGGTCAC ATGGTGCTTT CTACACTGCA CACCAACGAT
GCGGTAACGT CTGCGTTGCG ATTGGTAGAT ATGGGGGTAG ACCCGTTTCT TGTGGCGTCT
AGCTTAAAAG CAATCGTTGC GCAGCGCTTG GTAAGAAAGG TGTGTGAAAG CTGTGCAGAG
CCTCACGAAT TGGATGCGCA GGAACAAAGT TTATTGCGCA GGTTACAAAA AGGGCATTCG
CTAGAGAATA AAAACTTTAA AAAAGGGCGG GGGTGTATTC ACTGTTTTAA CAGCGGTTAT
CGCGGCCGAA TAGGTGTATT TGAGCTGCTA GAAATTAATA CCGAAATGGC AAATGCTTTG
CGAGATAACA GCGTGCGTAA ATTTAACGAT GCTGCCCATG CTCATCCACA GTATCGCCCG
CTAGGGGCAA GTGCGCTCGA CTTAGCCATT GAAGGTGTAA CCACATTAGA AGAAGTATTG
CGGGTAACGG CTGAAGTAGA AGATGAAAGC ATAGCCGATA TTGCCGACGC GACAGGAGCG
GCGGAGTAA
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| Protein sequence | MVERKRIRLG DLLVAQQLIT QEQLESALGA QKNTGRKLGR QLIEMGFVEE NTLLTLLSKQ
LEIPFVDLKH FRFEREVVQI LPEVHARRYR VVVLQDDPDG ILLGMSDPTD IFGLDELQKI
ITKPIKPAVV RESELLDVLD STYSRASEIA SLAEQLDDEL EEESVDLSDI ITDATDSDAP
IVKLLQKIFE EAINTRASDV HIEPDEHVLR IRQRIDGVLV EQVMNEKRIA GALVVRLKLM
SNLDISEKRL PQDGRFNLKV KNHNIDVRLS TMPVQFGESV VMRILDHTEG VRPLNKVGMP
EHYVNQFRHV ITRPHGLVLV TGPTGSGKTT TLYGALSELN TSEKKIITVE DPVEYRLPRI
SQVQVHEKIG LDFGLVLRAT LRQDPDILLI GEIRDAESAE IALRAAMTGH MVLSTLHTND
AVTSALRLVD MGVDPFLVAS SLKAIVAQRL VRKVCESCAE PHELDAQEQS LLRRLQKGHS
LENKNFKKGR GCIHCFNSGY RGRIGVFELL EINTEMANAL RDNSVRKFND AAHAHPQYRP
LGASALDLAI EGVTTLEEVL RVTAEVEDES IADIADATGA AE
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