| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1122 |
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| Symbol | |
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| ID | 3968309 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1455580 |
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| End bp | 1456632 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637920193 |
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| Product | ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | YP_526596 |
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| Protein GI | 90020769 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03427] ABC transporter periplasmic binding protein, urea carboxylase region |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACATC CATTCGTGCG ACTTTTTTTC GCATCCTCAG TAATTGTAAG CCTTTTATTT
TCTTCTCAAG CCGCGCTGGC AAAAGACAAT TTTAAAATTT GTTGGTCTAT TTACGTGGGA
TGGATGCCAT GGGAATACGG TGATACTTCA GGTATTGTTG ATAAGTGGGC CGATAAATAC
GGTATTGAAA TCGATGTAGT TCAAATAAAC GATTACATTG AATCAATTAA CCAATATACC
GCGGGATCAT TCGATGCCTG CACCATGACC AACATGGATG CGCTAACCAT TCCCGCTGCT
GGCGGCGTAG ACAGCACTGC GCTTATTGTG GGTGACTTCT CTAACGGTAA CGATGCCGTA
ATTCTAAAAG ACAAAAAATC ACTAAAAGAA ATTAAGGGCC AACAAGTTAA TTTGGTTGAG
CTTAGCGTTT CTCACTACCT TTTGGCCCGC GGTTTAGAGT CTGTAGGCTT GGCCGAGAAA
GATGTAAAAG TGGTCAACAC TTCCGATGCC GATATGGTTG CGGCTTACAC CACCAAAGAT
GTGACTTCCG TTGTAACGTG GAACCCTCTC GTAAGCGAAA TACTAACTAC GCCAGGCGCA
AATAAAGTTT ACGATAGCTC TAATATTCCC GGCGAAATTA TCGACACGCT TGTAGTTAAT
ACCGAAACAC TAAAAGCAAA CCCTAAATTG GGCAAAGCGT TAGTGGGCGC GTGGTACGAA
ATAATGGCAA AAATGGAAGC CGACAAAGCC GTTCGCGAGC ATATGGGTAA GGCTTCTGGT
ACCGATTTGG CGGGTTACGA AATGCAATTG GCATCCACCA AAATGTTTTA TAGCGCGGCA
GATGCGGTTG CGTTTGTAAA AAGCGAGCAG CTAGTTAAAA CCATGCAATA CGTTGCCGAG
TTTTCTTTTG ATCACGGTTT GTTAGGCGAA GGCGCGCCGG ATGCTGGTTT TATAGGCATA
GAAACTCCTG CCGGTGTGTT TGGCGATAAG GCAAATATCA AATTGCGCTT CGACGAAACT
TATATGCTAA TGGCTGCCGA AGGTAAGCTG TAA
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| Protein sequence | MKHPFVRLFF ASSVIVSLLF SSQAALAKDN FKICWSIYVG WMPWEYGDTS GIVDKWADKY
GIEIDVVQIN DYIESINQYT AGSFDACTMT NMDALTIPAA GGVDSTALIV GDFSNGNDAV
ILKDKKSLKE IKGQQVNLVE LSVSHYLLAR GLESVGLAEK DVKVVNTSDA DMVAAYTTKD
VTSVVTWNPL VSEILTTPGA NKVYDSSNIP GEIIDTLVVN TETLKANPKL GKALVGAWYE
IMAKMEADKA VREHMGKASG TDLAGYEMQL ASTKMFYSAA DAVAFVKSEQ LVKTMQYVAE
FSFDHGLLGE GAPDAGFIGI ETPAGVFGDK ANIKLRFDET YMLMAAEGKL
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