Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1106 |
Symbol | dnaE |
ID | 3968293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1428200 |
End bp | 1431721 |
Gene Length | 3522 bp |
Protein Length | 1173 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637920177 |
Product | DNA polymerase III subunit alpha |
Protein accession | YP_526580 |
Protein GI | 90020753 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0587] DNA polymerase III, alpha subunit |
TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCTCTC AATTCGTCCA CCTCCGTGTC CGCACAGAAT TCTCCCTTGT CGATAGTATT ATCCGGGTAA AGCCGCTTGT GGCGCGGGCT GCGCAGGCGC AGATGCCTGC AATTGCGGTG ACGGATTTCC ACAATTTCTT TGGCTTGGTT AAGTTCTACA AAGCGGCTCA AGGGGCGGGG GTTAAGCCTA TTTGCGGTTG TGATTTTCGC ATGGAGCCGT TGGACGAAGA GAGCAACCCA GCTATTTTTA CGCTACTTGC GATGAACCCC GAGGGTTATC GCAATATTAC CGAGCTTATT TCACTCAGTT ACCAAAAGGG CCAGAAACAC GGTGAGCCCT ATATTAAGTT TGAGTGGTTG GAGAAGTTTT CGGCGGGTGT TATTGCGTTG TCTGGTGGGC GTGTTGGCGA GGTTGGTCAG GCGCTTGTGG GTAATCGGCA GGTGGATGCA GAGGCAGCGC TGCAGCGTTG GATAGATGTA TACCCCAATC GCTTTTATAT TGAATTACAG CGCACGGGGC GCGAAAACGA AGAGCGTTAT TTGCACAAAG CTATGGCGTT GGCCGAAAAG TATCAATTGC CGGTAGTAGC AACTAACGAT GTGCGATTTT TAGATCAAGA TTTATTCGAT GTGCACGAAG CGCGCGTATG TATTGGTGAA GGGCGCGCAT TGGATGACCC TCGTCGAGAG CGCAAATACA CTGATCAACA ATACTTAAAA ACTGCAGAAG AAATGCAGGA GTTGTTTAGT GATATTCCCG AAGCCATTGA AAACACCGTA GAAATTGCCA AGCGCTGCTC AATTGAAATT CAATTGGGCA CGTACTTCCT GCCTGAATAC CCCATTCCTG AAGGGATGAC CGAGAACTCC TTTTTCGAAA AGATATCTTA CGAAGGTTTG GAGCGGCGTT TAAAAACTAT TCTAAAAGAA GACGATCCGG ATTACGCGAC GAAAAAACAG CCGTATTTAA ACCGCTTGAA ATTTGAGCTA GATATTATTA TTCAGATGGG GTTCCCCGGG TACTTCCTCA TCGTGATGGA CTTTATCCAA TGGGCCAAGG ATCACAATAT TCCTGTAGGG CCCGGTCGTG GTTCGGGTGC GGGTTCACTT GTGGCCTATG TGTTGGATAT TACCGACTTA GACCCGCTGC AATATGATTT GCTATTCGAG CGATTCCTCA ACCCAGAGCG GGTATCCATG CCGGATTTCG ACGTGGATTT CTGTATGGAG AAACGCGACC AAGTAATCAG CTATGTGGCG GATAACTACG GGCGCGATGC GGTATCGCAA ATTATTACCT TCGGTACCAT GGCGGCGAAG GCTGTGGTGC GCGACGTTGC TCGTGTTCAA GGTAAATCCT ACGGCTTGGC GGACAAGCTT TCTAAGATGA TTCCGCCAGA CCCAGGTATG ACCCTTACCA AAGCCTTCGA GCAAGAGGAG CCGTTGCGAG AATTTTTGGC AATGGACGGT GATGGCCAAG AAATTTGGGA TATGGCCCTT AAGCTAGAAG GTATAACCCG CAACGTAGGT AAGCACGCCG GTGGTGTTGT TATTGCGCCT ACGCGTCTTG TGGATTTTGC GCCGCTGTAT TGTGATGAGA GTGGATCGGG CCTTGTTACC CAGTTTGATA AAAACGACGT GGAGGAGGCG GGCCTCGTTA AGTTTGACTT TCTGGGTTTG CGTACACTTA CTATCATCGA TTGGGCAGTA AAAATGATCG ATGCCCAGCG CACCAAGCTG GGTGACCCAC CGTTAGATAT TTCCGCAATT CCGCTGGATG ACGCTAAAAC ATTTGCCCTG CTGAAGCGCG CAGAAACCAC CGCGGTGTTC CAGCTGGAAT CGCGCGGCAT GAAAGACCTT ATTACGCGTT TAAAACCCGA TACACTCGAA GAAATGATCG CATTGGTTGC GCTTTTCCGG CCTGGGCCGC TGCAGTCGGG CATGGTTGAT GACTTTATTA ACCGTAAACA TGGGCGGGCG CAGGTAGCCT ACCCAGATGC GAAATATCAG CATGAATGCC TACAGCCTAT TCTAGAGCCC ACCTATGGGG TAATTGTTTA CCAAGAACAG GTAATGCAAA TTGCGCAGGA GCTGGCAGGT TATTCGCTCG GTGGCGCAGA TTTGCTTCGC CGTGCAATGG GTAAGAAAAA ACCCGAAGAA ATGGCGAAGC AGCGCTCTAC ATTCCAAGAC GGCGCAGCGT CTAAAGGTAT CGACCCAGAA CTTGCCATCA AAATTTTCGA CTTGGTGGAA AAGTTCGCAG GTTACGGTTT TAACAAATCT CACTCCGCAG CTTATGCGTT AGTTTCTTAC CAAACCGCTT GGTTGAAGGC GCATTTTCCT GCGCACTTTA TGGCTGCCAC CATGTCTTCG GATATGGATA AAACTGATAA GGTTGTAACC TTTATCGAAG AATGCCGCAA TATGAAACTC AACCTATTGC CGCCGGATGT AAACCGCGGC GAGTTTCAAT TTACGGTGGA TGACGACAAT AACGTCATAT ACGGTTTGGG TGCCATTAAA GGCTTAGGAG AAGGGCCCGT TGAGGCCATT ATTGCGGCCC GTAAAGATGG TGGCGACTTT AAAGATTTGT TCGATTTTTG TGCGCGAGTG GATAGCAAGA AAATCAACAA ACGCGCCCTA GAAGCGCTAG TGCGCAGTGG TGCGTTGGAT AACCTCGGGC CTGGCATAGA CGTTGATTAC GACCGCGCCG TAATGGCGGC GGCAGTACCC GAAGCAGTGA AAGCCGCTGA GCAGAGTGCA GCCAATGCCA ACGCGGGTAT GAGCGACCTA TTTGGTGAGG TTGTACCTGT AGCCAGTGAG CGTGGTGATG CTTATTCCGA GTTTACTCAT GTGCGCCGCT GGAGTTTAAA AGAGCGTTTA AATGGTGAGC GCGATACCTT GGGCTTGTAC CTCACGGGTC ACCCCATTGA TGAATACGAC GAAGAGCTTA AGCACCTTGT TTCTAATCGC ATAGTGAATT TAAAGCCAGA TAGAGCCAAG CAAAAGGTTG CAGGTTTGGT AGTGGCGTTT CGGGTAATGA AAACCAAGCG CGGCGATAAA ATGGCCTTTG TTACTTTGGA TGATCGCACC GGACGCCTAG AAACAGCGGT ATTTGCCGAT ACCTATAACG AATATAAAGA CAAGTTAATT AAAGACGCGC TGCTAGTGAT TGAGGGCCAA GTAAGTAACG ATGATTACAG TGGCGGCCTT AAAATGCGCG CCGATTCCGT AATTGATATG AGCGAAGCGC GCGAGCAGAA TGTAGCCGGT ATTAAAGTGC ATTGGCACAT AGAAAAACTA CCTAAAAATT ACTCTAACCA GTTTAGAGAT ACGCTGCAAC AATATAGCGA TGGCGGTTGC CCTGTAACTA TTATTTACCA TAAGTCTGCA AGCTCGGTCG AGCTTAAGTT GGGGGACGAT TGGCGGGTTC GCCCGAGCGA AGAACTATTA GTGAATCTGC GTGGTCAGTA CGGTAACGAT GCCGTGGAAT TGCTGTATAA AACCAGTAGT CCTTCCTACT AA
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Protein sequence | MSSQFVHLRV RTEFSLVDSI IRVKPLVARA AQAQMPAIAV TDFHNFFGLV KFYKAAQGAG VKPICGCDFR MEPLDEESNP AIFTLLAMNP EGYRNITELI SLSYQKGQKH GEPYIKFEWL EKFSAGVIAL SGGRVGEVGQ ALVGNRQVDA EAALQRWIDV YPNRFYIELQ RTGRENEERY LHKAMALAEK YQLPVVATND VRFLDQDLFD VHEARVCIGE GRALDDPRRE RKYTDQQYLK TAEEMQELFS DIPEAIENTV EIAKRCSIEI QLGTYFLPEY PIPEGMTENS FFEKISYEGL ERRLKTILKE DDPDYATKKQ PYLNRLKFEL DIIIQMGFPG YFLIVMDFIQ WAKDHNIPVG PGRGSGAGSL VAYVLDITDL DPLQYDLLFE RFLNPERVSM PDFDVDFCME KRDQVISYVA DNYGRDAVSQ IITFGTMAAK AVVRDVARVQ GKSYGLADKL SKMIPPDPGM TLTKAFEQEE PLREFLAMDG DGQEIWDMAL KLEGITRNVG KHAGGVVIAP TRLVDFAPLY CDESGSGLVT QFDKNDVEEA GLVKFDFLGL RTLTIIDWAV KMIDAQRTKL GDPPLDISAI PLDDAKTFAL LKRAETTAVF QLESRGMKDL ITRLKPDTLE EMIALVALFR PGPLQSGMVD DFINRKHGRA QVAYPDAKYQ HECLQPILEP TYGVIVYQEQ VMQIAQELAG YSLGGADLLR RAMGKKKPEE MAKQRSTFQD GAASKGIDPE LAIKIFDLVE KFAGYGFNKS HSAAYALVSY QTAWLKAHFP AHFMAATMSS DMDKTDKVVT FIEECRNMKL NLLPPDVNRG EFQFTVDDDN NVIYGLGAIK GLGEGPVEAI IAARKDGGDF KDLFDFCARV DSKKINKRAL EALVRSGALD NLGPGIDVDY DRAVMAAAVP EAVKAAEQSA ANANAGMSDL FGEVVPVASE RGDAYSEFTH VRRWSLKERL NGERDTLGLY LTGHPIDEYD EELKHLVSNR IVNLKPDRAK QKVAGLVVAF RVMKTKRGDK MAFVTLDDRT GRLETAVFAD TYNEYKDKLI KDALLVIEGQ VSNDDYSGGL KMRADSVIDM SEAREQNVAG IKVHWHIEKL PKNYSNQFRD TLQQYSDGGC PVTIIYHKSA SSVELKLGDD WRVRPSEELL VNLRGQYGND AVELLYKTSS PSY
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