Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1093 |
Symbol | |
ID | 3968257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1398972 |
End bp | 1402448 |
Gene Length | 3477 bp |
Protein Length | 1158 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920161 |
Product | TonB-dependent receptor |
Protein accession | YP_526567 |
Protein GI | 90020740 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000168671 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.12204 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTTATC GACAAGATAA AACAGAAGAA AACTTGCTTC ATCGCGGCTT ATTCAAGCGC ACCGCGCTAG CGGCTTGTGT GATGGCTTTG TCTTCTTCAC CTTCATTTGC TCAGGAAGAG GGTGCAGACT TAGAGGAAGT TATTGTTACA GGCACACGTG CAAACTTGCA GAATGCGCAA GACATAAAGC GTGAAGCGGA TACATTTGTG GATGCGATTT CTGCAAAAGA TATCGGTTCG TTGCCTGATC GAAGTGTATT GGAAGCTATT CAGCGTTTGC CTGGTGTATC GGTAGAGCGC TTCGCTGGGC CTGATGACCC TGATCACTTT AGTGTGGAAG GTTCTGGTGC TGTTATTCGT GGTATGACTC AAACCCGTTC AGAATTTAAT GGTCGCGACT CATTCACTGC GAACTCTGGT CGAGGCCTTT CTTTCCAAGA CGTTTCTCCA GAGTTGATGG GGGGCGTTGA TGTATATAAA AACCAAACTG CAGACATGAT AGAAGGCGGT ATTGGTGGAA CAATTAGCTT AAAGACACGT AAGCCATTTG ATGCAGAGGG TAGAGTTCTT TCGTTTAGTG GCGATATGTC TCGTGGCGAT ATGGCGAAAG AGTGGACGCC TACCGTTTCC GGTTTATTCA GTGACCGCTG GGATACAAGT ATTGGTGAGT TTGGTTTACT TCTAAATGCT GCCGATTCAA GTTTACGTGG TCGCTCTCAT GGTATTCAGT CTGATGCATA TGTGCAATAT AGCGCTGCAG ATATTCGCGG GGCTGAAGAG TTTGTTGATG GTGACGGAAT TGTTTGGATG CCAAACGGTT CAAACTTGCT AGACAAAGAT GATGACCGTC ACCGTTCCGG TTTTGCTGCA ACAGTACAGT GGGAAAATCC CGATGATACG CTGCTTGCTA CTTTTGAATA CATTCGATCA GAAGCGACTT TGGCTTGGAC TGAGCGGGCT CTGAAGTATC AGGGCGGTTA TTATGATGAA GACGCACAGA CAGATATTCG TCGTACGCGT CCTGCGGATG CCTTCATCAA TAACAACATC CATGGTGTAA ACGAAGATAC CGAATTCCAA TTTTCTAATG ACGGTGTTTT TGAAGCGGGC TTCCTAACCG ATACTGATGG TTGGCGAGTT GCTGATGATA ATATCGATCA TGTTGCACGT GCATCATGGT CTGATAATGG TCAAGATCAA TTCGGCCATA AATTCCAAAC TGACACTCGT GTTAAAAAAA CCAATACCTT AGTGGAAGAC TTCTCTATTA ATTTGAAATG GTCTCCAACA GAGCAAATCG ATGTTGAGTG GGATGCTCAA TACATTCAGG CTGAAAGCCG CGATGATGAT GTTGTTGTAA TGCTTGGTAT TTATGCTTTG CAAGATTACG ACACGCGTGG TGATACTCCA ACGCTAAATA TTTACGAGCC TTGGGGTGGT GTTCGTGATG CTGCTCGTGC ATCTGGTGAT GACCGTTTTG AAACCTATCC CACAGCAGCC TTTACTGACT ATCCAGGGTT TAGTGGCGAT CCAGATGGGG ATGCTAACTA TTTCCAAGAC TCCAATAACT ATTGGTGGCG TTCTGCGATG GATCACTATG AGCGCTCTGA AGGTGATTCG TTTGCAACTC GTTTAGACGG TACTTACCAC TTTGAAGATG TTCCATTCGT GCGCTCCGTT AAGGCTGGCG TTCGCTACGC TAAGCGAGAG CAGTTGGTGC GTGCGACTGG TTGGAACTGG GGTAGCTTAG GCCCCGAGTT TTCAGGCGGC AATCGTGCAC ATTGGCTTGC CGAAACTCCT GGTCAGCAGG ATGACTGGGA GCTGGTGGAT TGGAGTGATT TCCACGGTGG TGGTGTGGCG AATATCCCTG GTGGGCAGTT AGCTCACGCT TCTGAGGATT TCGTTAAGAG TTTGGTTGCT GGTCGCGGCG GTAGTGCAGA ATTAAGTGAT GCTGGTAATT GGCAACCTTA TCAAGATCGT TCAAATGTTG ATGATGAATA CGGTCTGTTT TCTCCCGGTG AAATTTATAA AACAACTGAA ACTAACAATG CGGCATACGT AAGAGTTGAT TTTGGCTCTG ATGACTTTGC AATGCGTTTC AGTGGTAACG TGGGGTTGCG TTACGTGTCT CTAGATCGCG AGGCCCAAGG CTCCATTCAA TTCCCAGATT TAGTACCCGA CCATGCAGTT CCTTCTGATT GGTCTATGCC TTTAGATCGT GACGCAGTAG TTGCTTTTGT TGATACAGAG GTTGCGGCAA CAGGCGTGAT GGATAACATT CCAGACCCTG GTAATGACCC AGATTCAGCT GAGTGGCAAG AGTATGAGGA CCGTGTAGTA GCGATTGATC AAGAGTACGC TGCTGTTTTA TCTGCGAACG AATGGATTGG TGATGCTCGA AATTGGTTGA CTCAAGAAGA GCGCAATTTT GGTAACGATC AGGAAGTGCT ATCTGTTCAA GAAGCCAGCT TTGATATGTT ACTTCCTAGT TTGAACCTTA AAGTTGAAGT AACTGACGAT CTCGTAGCTC GATTTGCAGT GTCAAAGGCC GTTGCGTTGC CTGATATGGA GCAAGTTAAA AATCAAGCTG CTCTGGGTAA CTTGGAGGTT CAGGAAAGCA GATACGAAGT ACCTAATCCC GATCCAGATG CTGCGCCAGA GCCTACCCCT ATTCGAACAG CAGACCTTCG TTTGCTAACC GAGGCGTACG TGCCTGGGTG GACAGGAGAT GGTGGTAACC CACAATTGAA ACCAATGGAA AGTGTTCAAT GGGATTTATC GTTGGAATGG TATTTCAGCG ATGTAGGCTC TTTGACAACA AGTCTATTCC ATAAAGATTT GGAAAACTTC TTTATCTCTG GGGCATTTCC TAAGTCTTAT ACCAATCCAT CGGGTGTGTC GCAGGTTGCT GACGTAACTC ATACTATTAA CTCGGGTACG GGTAAAATGG ATGGTGTAGA AATAGCTTAT CAGCAATTCT ACGATATGCT ACCAGAGCCA TTTGATGGAT TCGGTATACA AGCTACTTAT ACTTACATTG AGGCAAGTGG GATTCCTAAT AATCAGCTTT CGCCAGATGA GGATGGGTTC ACCGATACGG TGAATGACAC AGGTGCTCGG GTTGCTCTCG AGGATGTGCC TTTGCAAGGG CAGTCTAAGC ACACCGCTAA CTTCGTGTTA ATGTATGAGA AGTATGATTG GAATGCTCGT TTAGCGTATA ACTGGCGTTC TAAGTATTTG CTCACCACCC GCGATGTGAT CAGTAAGTAC CCATTATGGT ATGACGATCA TGGCCAACTT GATGGTTCTG TCTTTTACGA CGTGAATGAT AACGTAACCG TGGGAGTTCA GTTGAATAAC ATCACTAACT CTCAGTCTGA GACGATCATG ATTCTTGACG GCAAAGGAAC TGAGGCGGGG CGCTCATGGT TTGTGCAGGA CCGCAGAGCC TCCTTGGTGG TACGAGCTAA TTTCTAA
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Protein sequence | MVYRQDKTEE NLLHRGLFKR TALAACVMAL SSSPSFAQEE GADLEEVIVT GTRANLQNAQ DIKREADTFV DAISAKDIGS LPDRSVLEAI QRLPGVSVER FAGPDDPDHF SVEGSGAVIR GMTQTRSEFN GRDSFTANSG RGLSFQDVSP ELMGGVDVYK NQTADMIEGG IGGTISLKTR KPFDAEGRVL SFSGDMSRGD MAKEWTPTVS GLFSDRWDTS IGEFGLLLNA ADSSLRGRSH GIQSDAYVQY SAADIRGAEE FVDGDGIVWM PNGSNLLDKD DDRHRSGFAA TVQWENPDDT LLATFEYIRS EATLAWTERA LKYQGGYYDE DAQTDIRRTR PADAFINNNI HGVNEDTEFQ FSNDGVFEAG FLTDTDGWRV ADDNIDHVAR ASWSDNGQDQ FGHKFQTDTR VKKTNTLVED FSINLKWSPT EQIDVEWDAQ YIQAESRDDD VVVMLGIYAL QDYDTRGDTP TLNIYEPWGG VRDAARASGD DRFETYPTAA FTDYPGFSGD PDGDANYFQD SNNYWWRSAM DHYERSEGDS FATRLDGTYH FEDVPFVRSV KAGVRYAKRE QLVRATGWNW GSLGPEFSGG NRAHWLAETP GQQDDWELVD WSDFHGGGVA NIPGGQLAHA SEDFVKSLVA GRGGSAELSD AGNWQPYQDR SNVDDEYGLF SPGEIYKTTE TNNAAYVRVD FGSDDFAMRF SGNVGLRYVS LDREAQGSIQ FPDLVPDHAV PSDWSMPLDR DAVVAFVDTE VAATGVMDNI PDPGNDPDSA EWQEYEDRVV AIDQEYAAVL SANEWIGDAR NWLTQEERNF GNDQEVLSVQ EASFDMLLPS LNLKVEVTDD LVARFAVSKA VALPDMEQVK NQAALGNLEV QESRYEVPNP DPDAAPEPTP IRTADLRLLT EAYVPGWTGD GGNPQLKPME SVQWDLSLEW YFSDVGSLTT SLFHKDLENF FISGAFPKSY TNPSGVSQVA DVTHTINSGT GKMDGVEIAY QQFYDMLPEP FDGFGIQATY TYIEASGIPN NQLSPDEDGF TDTVNDTGAR VALEDVPLQG QSKHTANFVL MYEKYDWNAR LAYNWRSKYL LTTRDVISKY PLWYDDHGQL DGSVFYDVND NVTVGVQLNN ITNSQSETIM ILDGKGTEAG RSWFVQDRRA SLVVRANF
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