| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1087 |
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| Symbol | |
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| ID | 3968251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 1389354 |
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| End bp | 1390736 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920155 |
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| Product | 3'-5' exoribonuclease, VacB and RNase II |
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| Protein accession | YP_526561 |
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| Protein GI | 90020734 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00818194 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.118313 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCCT TTGAAAAAAT TAAGAAAAGC CCTGCCTTAG GCTTTGTTAA GCACTTTCCA
CGCGCGCACT TTATAGCCGT TGCGGCTTTA TCTGTGGTTC TCGTCGGCGC ATCGATGCTT
CCTAGCGATA ATGCCTCGGC CAGTCGCCAC GAACAGGTAA TAGCCATCCC TGCACTAAGC
CAGGTAGATG AGCAACCTAT TACACTACCT GTAGAGCCGC CTCCCCCAGA GGTTAAGCAA
ACGCCCTATC GCATTTCAAA CCAAACGGTG CGCTCAGGGG ACAATCTATC CCTTATATTC
AAACGTGCGG GCCTCAGCGA TAAGCATATG ATTGGCCTGC TTAATGGCAA TGCAGATAGC
AAGCGGCTTA CCAAGCTGTT TCCGGGCCAT ACCTTAGAGT TCAGCATAAG CGATGAAGGC
GAACTGGTTG AACTGCAGTA TGTGAAAAGC CGCCTAAATA AGCTGGTATA TACCAAGTTA
GATTCGGGCT ACGACTTTGA AGAAATTGTT CGTCAGCCAG ATATCCATTC TGCTTCGCGC
AGCGGCAAAA TAAGCACAAG CTTATTTGAT GCCGGCATGC AGGCCAATTT AGACGACCGC
CTGATTATGG AATTTGCCAA CATATTCGGT TGGGACGTGG ATTTCGCCTT GGATATTCGC
AAGGGCGACA CCTTTAAAGT GCTATACGAA GAGAAATTTT TAGACGGTGA AAAGCTGGGC
AATGGAGAGA TACTTGCTGC GGAGTTTATT AACCAAGGCG AAGCGTTTCG CGCGGTGCGC
TATGTAAACG AAGACGGCGA AAGCAGCTAT TACGCCCCAG ATGGCACCAG CATGCGCAAA
GCATTTTTAC GCGCACCTCT CGACTTCCGC CGCATAAGCT CTAACTTTAA CCCCAAGCGC
TTGCACCCTA TTACTAAAGT AGTTAGGCCT CACCGCGGCA CCGATTACGC CGCCGATAGA
GGCACCCCCG TATGGGCGGC TGGCGCCGGC CGTGTTATCG CGTCGGGCTA CACCCAATAC
AACGGCAACT ATATTGTTAT TCAACACGGC AACAATATTC AAACCAAATA CCTTCACCTG
CATAAACGCT TCGTTAAAAA AGGCGACCGA GTAAAACAAA AACAACGCAT TGGCAGTGTA
GGCTCTACCG GTTTGTCGCA AGCCCCACAT TTACACTACG AGTTTTTGTT AGACGGCGTG
CACCGCAACC CGCGTACAGT TATCAACAAA CTACCTAAAG CAGATTCGAT AGCAAAATCT
GAGATGGCGC GCTTCCAAAA CCAAACCCAA GTTTGGATAG CGGAACTTGA GCCAACCACA
AACACCCGCT ATGCGGCATC AGATATTCTA AGCGAAAGTG CCGAGGCGAA GTCGTCGCTG
TAA
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| Protein sequence | MEAFEKIKKS PALGFVKHFP RAHFIAVAAL SVVLVGASML PSDNASASRH EQVIAIPALS
QVDEQPITLP VEPPPPEVKQ TPYRISNQTV RSGDNLSLIF KRAGLSDKHM IGLLNGNADS
KRLTKLFPGH TLEFSISDEG ELVELQYVKS RLNKLVYTKL DSGYDFEEIV RQPDIHSASR
SGKISTSLFD AGMQANLDDR LIMEFANIFG WDVDFALDIR KGDTFKVLYE EKFLDGEKLG
NGEILAAEFI NQGEAFRAVR YVNEDGESSY YAPDGTSMRK AFLRAPLDFR RISSNFNPKR
LHPITKVVRP HRGTDYAADR GTPVWAAGAG RVIASGYTQY NGNYIVIQHG NNIQTKYLHL
HKRFVKKGDR VKQKQRIGSV GSTGLSQAPH LHYEFLLDGV HRNPRTVINK LPKADSIAKS
EMARFQNQTQ VWIAELEPTT NTRYAASDIL SESAEAKSSL
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