| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1066 |
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| Symbol | |
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| ID | 3967860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1366085 |
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| End bp | 1366900 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920134 |
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| Product | GGDEF |
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| Protein accession | YP_526540 |
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| Protein GI | 90020713 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAATT CCGAAAAATT GTTTGTTGTG GTAGACCCTT CAGATACTAA ACATGTGGCA
CTAGAGCGTG TATTGCGCAC TGGCCAGCTT CGTGGCGAGC CACCAGTAAT CAAAGTGTTT
GTTGCCGTTG ATGGCGACGC GGTGGACACT CGAGTAGTAA ACGATAACTT GTTCCGCGAC
CAATCTTGGT TCGAAACAGA AATTCGCAAA CCAATGCTAG ATGCTGGCTT AGAGTGCCAT
ATCGAAGTTT CGTGGTGTCA AGAATGGCAG AAGTCTATTG TGCAGTCGGC AAAAAGCTTT
GGCGCAGACC GCATTTATTT GCCTGTACAC GAGCGTACTA ACTCTACTCG CTTTACATTC
AGTGAATCTA AATGGGCGCT ATTAAAAACA GCTGAATGCC CTGTAGTGTT AATTCAGCCT
GGCGCCAAAC CAGAGCGCAC CGTTGTAGCG GCGGCTGTTA ACTTCCAAAC TACCAAAGAA
GAGCAAAAAG AACTAAACAA GAGTATTTTG CGCTGGGGCC GTGAAGTGGC AGCCATGTAC
GGTGCTGAGT TCCATGTAAT CAACGCTTTC TTGGATCAAA TGAACTACCC AGATCGCGGT
AACTTGGCGC GCCAAACTGG TTTGCCCGCA GATAAAATTC ACGTTAAACC AGGCTACACC
GACGAAGTTG TTTCTACAAT TGCCGGTGAA ATTAAAGCCG ATTTAGTGGT TATGGGTACC
TTGGGCCAAA ACGGTTTGGT TACTTCTCGT CGCGGTAACA CTGCCGAGCG TGTAATCGCA
GCCCTTACTC AAGACGTAAT GGTTGTAAAC CACTAA
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| Protein sequence | MSNSEKLFVV VDPSDTKHVA LERVLRTGQL RGEPPVIKVF VAVDGDAVDT RVVNDNLFRD
QSWFETEIRK PMLDAGLECH IEVSWCQEWQ KSIVQSAKSF GADRIYLPVH ERTNSTRFTF
SESKWALLKT AECPVVLIQP GAKPERTVVA AAVNFQTTKE EQKELNKSIL RWGREVAAMY
GAEFHVINAF LDQMNYPDRG NLARQTGLPA DKIHVKPGYT DEVVSTIAGE IKADLVVMGT
LGQNGLVTSR RGNTAERVIA ALTQDVMVVN H
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