| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0982 |
|---|
| Symbol | |
|---|
| ID | 3966224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1256063 |
|---|
| End bp | 1256458 |
|---|
| Gene Length | 396 bp |
|---|
| Protein Length | 131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920049 |
|---|
| Product | 30S ribosomal protein S11 |
|---|
| Protein accession | YP_526456 |
|---|
| Protein GI | 90020629 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0100] Ribosomal protein S11 |
|---|
| TIGRFAM ID | [TIGR03632] 30S ribosomal protein S11 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000000271815 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00410898 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC CAAGTGGTAA GTCAACGACC AAGAAAAAGG TCAAAAAGAC CGTTGTTGAC
GGAATCGCGC ATATTCATGC TTCGTTTAAT AACACTATCG TGACGATTAC TGATCGTCAG
GGTAATACTT TATCTTGGGC AACTGCGGGC GGTTCTGGTT TCCGCGGTTC TCGTAAAAGT
ACTCCTTTTG CTGCACAGGT TGCGGCAGAG CGTGCAGGCC AAGCTGCACA AGACTACGGT
CTTAAAAATT TGGATGTAGA AGTTAAGGGT CCTGGTCCGG GTCGTGAGTC AGCTGTACGT
GCTTTGAACA ATATTGGTTA CAAAGTTAAC AACATTACAG ATGTGACACC GATTCCGCAC
AACGGCTGTC GTCCACCCAA AAAGCGTCGC GTATAA
|
|---|
| Protein sequence | MAKPSGKSTT KKKVKKTVVD GIAHIHASFN NTIVTITDRQ GNTLSWATAG GSGFRGSRKS
TPFAAQVAAE RAGQAAQDYG LKNLDVEVKG PGPGRESAVR ALNNIGYKVN NITDVTPIPH
NGCRPPKKRR V
|
|---|
| |