| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0976 |
|---|
| Symbol | rpsE |
|---|
| ID | 3966218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1252727 |
|---|
| End bp | 1253239 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637920043 |
|---|
| Product | 30S ribosomal protein S5 |
|---|
| Protein accession | YP_526450 |
|---|
| Protein GI | 90020623 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0098] Ribosomal protein S5 |
|---|
| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0109709 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000385854 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAAC AAAACAAACG AGAAGACAGC AACGCCGAAG GTTTGCAAGA GAAGCTTGTT
CAGGTTAACC GTGTTGCTAA AACCGTTAAA GGTGGTCGCA TCTTTGGTTT CACCGCTCTT
ACAGTTGTTG GTGATGGTAA CGGTAAAGTA GGTTTTGGTC GTGGTAAGGC TCGTGAAGTA
CCAATTGCTA TTCAAAAAGC AATGGAAGCT GCACGCCGTA ACATGATCCA AGTTGAGTTA
GATGGTGATA CCATCCAATA CCCAACTAAA GGCCGTCACG GAGCTTCTAA AGTTTATATG
CAGCCTGCTT CTGCTGGTAC TGGTGTAATT GCCGGTGGCG CAATGCGAGC TGTTTTGGAA
ATCGCTGGCG TACAGAACGT TTTGGCTAAG TGCTACGGGT CTACCAACCC AGTAAACGTT
GTACGAGCTA CATTTGAAGC TTTGCGCGCT ATGTCATCAC CCGAGCGTGT TGCAGCTAAG
CGTGGCAAAT CAGTTGAAGA AATCATAGGT TAA
|
|---|
| Protein sequence | MSQQNKREDS NAEGLQEKLV QVNRVAKTVK GGRIFGFTAL TVVGDGNGKV GFGRGKAREV
PIAIQKAMEA ARRNMIQVEL DGDTIQYPTK GRHGASKVYM QPASAGTGVI AGGAMRAVLE
IAGVQNVLAK CYGSTNPVNV VRATFEALRA MSSPERVAAK RGKSVEEIIG
|
|---|
| |