| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0961 |
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| Symbol | rplD |
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| ID | 3967676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1245627 |
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| End bp | 1246241 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920028 |
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| Product | 50S ribosomal protein L4 |
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| Protein accession | YP_526435 |
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| Protein GI | 90020608 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0088] Ribosomal protein L4 |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000000392469 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000164794 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGAATTAA GTATTGCTAC ACCACAAGGC GCGAAGGGCA CAGTTAGTGT TTCTGAAGCG
GCTTTTGGCC GAGAATTTAA TCAAGATCTT GTTCATCAAG CTGTTGTTGC CTTTATGGCT
GGTGCTCGTC AGGGTACTAA AGCTCAAAAG AACCGCGCTG CGGTTTCTGG CGGCGGCAAA
AAGCCTTGGC GTCAAAAGGG AACTGGCCGT GCGCGTGCCG GTACTATCCG AAGCCCATTG
TGGCGTTCAG GTGGTGTTAC TTTTGCTGCT GAGCCTCGCG ATCATTCGCA AAAGCTGAAC
AAAAAAATGT ACCGTGCAGC GATTCGTTGC ATATTGTCTG AGTTGGCTCG TCAAGAGCGC
TTAGTTGTAG TTGAAGAGTT TGACTTGGAT GCTCCAAAAA CTAAGGATCT AGTTCAGAAG
CTAGCTCAGT TCGATTTGGC GGACGTTTTA ATTATTGGTG AAGACGTAAG TGAAAACTTA
TATCTAGCCG CACGTAATCT TCACAAGGTA GATGTTCGTG ATGTTAACGG TTTAGATCCT
GTTAGCTTGA TCCGCTTTGA TAAGGTTGTT GTGACCGTTG CAGCCCTTAA AAAACTTGAG
GAGGTGCTGG TATGA
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| Protein sequence | MELSIATPQG AKGTVSVSEA AFGREFNQDL VHQAVVAFMA GARQGTKAQK NRAAVSGGGK
KPWRQKGTGR ARAGTIRSPL WRSGGVTFAA EPRDHSQKLN KKMYRAAIRC ILSELARQER
LVVVEEFDLD APKTKDLVQK LAQFDLADVL IIGEDVSENL YLAARNLHKV DVRDVNGLDP
VSLIRFDKVV VTVAALKKLE EVLV
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