| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0960 |
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| Symbol | rplC |
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| ID | 3967675 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1244962 |
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| End bp | 1245606 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920027 |
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| Product | 50S ribosomal protein L3 |
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| Protein accession | YP_526434 |
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| Protein GI | 90020607 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000000067151 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000166028 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGACGATTG GTATAGTCGG CCGCAAGAGC GGTATGACGC GCATTTTTAC AGACGATGGT
TTATCCGTTC CTGTTACTGT GGTTGAGGTT GATCCTAACC GCATCACCCA GGTGAAAAGC
GTAGAAACCG ACGGTTATGC AGCAGTGCAA GTAACCGTAG GGTCTCGTCG AGCCTCCCGT
GTTAGCAAGC CTGAAGCGGG TCATTTTGCT AAAGCAGAAG TTGAAGCGGG TCGCACCGTA
CTTGAATTGC GCAACGAAAG TGGCGAGCAA TTCGAAGTTG GTGGGCTGCT AACTGTTGAA
GCTTTCGAAG CTGGTCAAAA AGTTGATGTG ACTGGTGCAT CTAAAGGTAA GGGTTTTGCT
GGCGTGATTA AGCGCTACAA CTTCCGTATG CAAGATGCAA CACATGGTAA CTCTTTGTCT
CACCGTGCTC CTGGTTCTAT TGGTCAATGT CAAACTCCTG GCCGAGTATT TAAAGGCAAG
AAGATGGCAG GTCATATGGG TGCTGCACGT GTAACCACCC AGAACTTAGA AGTTGTTCGG
GTCGACGTTG AGCGTAATTT ACTGTTGATC AAGGGTGCTG TTCCTGGTGC TCCTGGTGGT
GACGTAATTA TTCGTCCCGC AGTTAAATCG CGTAACAACG GTTAA
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| Protein sequence | MTIGIVGRKS GMTRIFTDDG LSVPVTVVEV DPNRITQVKS VETDGYAAVQ VTVGSRRASR
VSKPEAGHFA KAEVEAGRTV LELRNESGEQ FEVGGLLTVE AFEAGQKVDV TGASKGKGFA
GVIKRYNFRM QDATHGNSLS HRAPGSIGQC QTPGRVFKGK KMAGHMGAAR VTTQNLEVVR
VDVERNLLLI KGAVPGAPGG DVIIRPAVKS RNNG
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