Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0940 |
Symbol | |
ID | 3965335 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1213937 |
End bp | 1215352 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637920007 |
Product | glucuronate isomerase |
Protein accession | YP_526414 |
Protein GI | 90020587 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1904] Glucuronate isomerase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000000809082 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00761508 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGCGAAC TGATTTTGCA CCCCGACCGC CTCTTTCCTG CCGAGGAATC TGTACGTGGC ATTGCCCGCA GGTTGTACGC AGAGGTTAAA GATCTTCCTA TTGTTAGCCC GCACGGTCAT ACCGACCCAA GTTGGTTTGC AGATAACCAG CCCTTCGATA GCGCAGCGGA TTTGCTAATT AAGCCAGATC ACTATGTATT CCGCATGCTG TATAGCTTGG GTGTTCCTTT GGAATCCTTA GGTGTGCCCA CCGTTGATGG CACTGAAGTT GAAACCGATG GCCGCAAAAT TTGGCAAACC TTTGCCAAGC ATTACACCGC CTTCCGCGGC ACGCCTTCGC GCATGTGGCT AGATCACGTA TTTAAAGATG TGTTCGGTTT TGAAAAAGCG TTAAGCGCAG CAACGGCAGA TGATTATTAC GACGGCATTA ACGCTGCGCT GCAAACACCA GAGTTCTTGC CGCGCGCGTT GTTTGATCGG TTTAAAATTG AATGGTTGGC CACCACCGAG TCGCCACTTA ACGACTTGCG CCACCACCAA AAAATCCGTG AAAGCGGCTG GAAGGGCAAC GTTATTACCG CTTACCGCCC AGACCCAGTG GTAGACCCCG ACTTCGAAGG CTTTGCTTCT AACGTGGCTT ACTTAGGTAA GATTACTGGC GAAGACACGT CCAACTGGGA AGGCTACCTA GCGGCTTTGC GCAACCGTCG CGAGTACTTT AAGGCGCACG GTGCAACATC CACCGACCAC GGCCACCCAA CAGCTGTAAC CGCAGATTTG TCGCGCCCAG AAATAGAAAC CTTATTCGCG AAAGCGTTAG CAGGTAAATG CAGCGCAGCG GAAGCTGAAT TGTTCCGCGG TCAAATACTT ACCGAAATGG CTGGCATGAG TTTAGAAGAC GGCTTGGTGA TGCAGATTCA CCCCGGCTCA TTCCGCAACC ATAACCCTAA ATTGTTCGCG CGCTACGGCC GTGATAAAGG GGCAGATATC CCATCTCAAA CTGAGTATGT GAACGCGCTT AAGCCGTTGC TAGACAAATA CGGCAACGAG CCTAACCTTA CTATTATTCT GTTCACTCTG GATGAGACGG TATACAGCCG CGAGTTGGCG CCTCTTGCGG GTCATTACCC TGCATTAAAG TTGGGGCCAT CTTGGTGGTT CCACGATAGC CCAGAAGGTA TGCGCCGCTT CCGTGAACAG GTAACCGAAA CAGCGGGTTT CTATAACACT GTAGGCTTTA ACGACGATAC ACGCGCATTC CTGTCTATTC CAGCACGCCA TGATGTGGCG CGTCGAATGG ATTGCGGCTT CTTGGCCAAG CTTGTTAGCG AGCACCGTTT GCAGGAAGAC GAAGCACGCG AAGTGGCTAT CGACTTAACT TATAACTTGG TTAAGCAGGC CTATAAATTA GATTAA
|
Protein sequence | MSELILHPDR LFPAEESVRG IARRLYAEVK DLPIVSPHGH TDPSWFADNQ PFDSAADLLI KPDHYVFRML YSLGVPLESL GVPTVDGTEV ETDGRKIWQT FAKHYTAFRG TPSRMWLDHV FKDVFGFEKA LSAATADDYY DGINAALQTP EFLPRALFDR FKIEWLATTE SPLNDLRHHQ KIRESGWKGN VITAYRPDPV VDPDFEGFAS NVAYLGKITG EDTSNWEGYL AALRNRREYF KAHGATSTDH GHPTAVTADL SRPEIETLFA KALAGKCSAA EAELFRGQIL TEMAGMSLED GLVMQIHPGS FRNHNPKLFA RYGRDKGADI PSQTEYVNAL KPLLDKYGNE PNLTIILFTL DETVYSRELA PLAGHYPALK LGPSWWFHDS PEGMRRFREQ VTETAGFYNT VGFNDDTRAF LSIPARHDVA RRMDCGFLAK LVSEHRLQED EAREVAIDLT YNLVKQAYKL D
|
| |