Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0932 |
Symbol | |
ID | 3965573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1205133 |
End bp | 1206128 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637919999 |
Product | ribosomal protein L22 |
Protein accession | YP_526406 |
Protein GI | 90020579 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00199483 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00633944 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGATCT TTAGTAGTAA TACCTCTCGA ATTCTAAATG CACTTCTTGT TCTCTGTTTT GTATGGCTGC TTAGCGCATG TACGGCGAAG AGTGAAGTTG AAGTGCTCAA AATGGCGCAC AGCTTGCCAA CCGATCATCC CGTGCATGAA GCTATTATGT ATATGGGGGA GCGCTTGCGA GTGCTATCCG ACGGCAAGAT GGATTTACAG GTCTACCCTG GTGGTCAGTT GGGCGGCGAG CGCGAGCTAA TTGAGTTATT GCAAATAGGT AGCTTAGCAA TGACTAAGGT GTCTTCCAGC CCTATGGAAG GTTTTGTTCC CGAAATGAAA GTATTCAGTA TGCCTTATGT GTTTCGCGAT AGTGAGCATT ACTGGCGTGT GCTCGATAGC GAGCTAGGTA AAGAGCTGTT GCTATCTGGG GAAAAAGTAA GGCTGCGCGG TTTGGGTTAC TACGATGCTG GTAGCCGCAG CTTTTACACT GTGAAAAAGC CAATTTACAA GCCCGAAGAT TTAAAGGGCT TAAAAATACG TGTGCAAAAA AGTCAAACGT CTCTACAGAT GGTGCGCGCT TTAGGCGGTG CTGGCACGCC AATTTCTTGG GGTGAGCTAT ACACTGCGCT AGATCAAGGT GTTGTAGATG GCGCCGAAAA TAACCCTCCT AGTTTTTATA CTTCTGGTCA TTACGAGGTT GCCAAGTACT ACACTTTAAA TGAGCACACC TTTGTACCAG ATATTGTGCT GATTAGTACC TACGTGTGGA ACAATCTTAC GCCACAGCAG CAGGAGTGGG TGCAGCAGGC TATGGACGAG TCGGTAGTGT TTGAACGCAA AGCTTGGGCA GACGCTACAG CGCACGCGTT GGCAGAAGTG GAAAAAGCAG GCGTGAAAAT TATTCGGCCA GATAATTCGC TCTTTGCAGA AAAAGTAAAA GCAATGCATG AGGCAGCGAA AGGCACGCCT GCTCACGATC TTATGCAAGC CTTTGGCAAA CTATAG
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Protein sequence | MAIFSSNTSR ILNALLVLCF VWLLSACTAK SEVEVLKMAH SLPTDHPVHE AIMYMGERLR VLSDGKMDLQ VYPGGQLGGE RELIELLQIG SLAMTKVSSS PMEGFVPEMK VFSMPYVFRD SEHYWRVLDS ELGKELLLSG EKVRLRGLGY YDAGSRSFYT VKKPIYKPED LKGLKIRVQK SQTSLQMVRA LGGAGTPISW GELYTALDQG VVDGAENNPP SFYTSGHYEV AKYYTLNEHT FVPDIVLIST YVWNNLTPQQ QEWVQQAMDE SVVFERKAWA DATAHALAEV EKAGVKIIRP DNSLFAEKVK AMHEAAKGTP AHDLMQAFGK L
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