Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0907 |
Symbol | |
ID | 3965543 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 1171148 |
End bp | 1172764 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637919969 |
Product | Na+/melibiose symporter and related transporters-like |
Protein accession | YP_526381 |
Protein GI | 90020554 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2211] Na+/melibiose symporter and related transporters |
TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000225717 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000181101 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCGCAAG ATAGAACGGG GACAATTAGC TTAAAAGAGA AAATTGGCTA CGGCTTTGGC GATGCCGCAT CTAATTTTTA TTGGGCTATT ATCGGCTCTT ACTTGGTGTT CTTTTACACC GATATTTTTG GTATTTCGGC CAAATCCGTC GCCATCATGA TGGTCGTTAC CAAGCTTATA GATGCCTGTA CAGACCCAGC CATAGGGGCA ATAGCAGATA GAACGAACAC CCGCTGGGGC AAGTTCCGGC CTTACTTATT GTTTGGCGCC CTACCCATGG CCGGTGCTGC AGTGCTCACC ATGAGCACAC CAGATTTAGG CGATACAGGT AAATTAGTAT GGGCCTATAT TACCTACACC CTAATGATGC TTACCTACAC CATTTTGAAC TTGCCATACT CATCGTTAGC AGGGGTGATA ACCGCAAACA CAGCAGAGCG AAACTCATTA TTTAGCATTC GCTTCTTTTG CGCCTATTTC ACCAGTATTA TCGTTGGTGC CGCCACCCCA GATCTCGCCG CGTATTTTGG CCAAGGCGAC GACGCCAAAG GCTGGCAAAT GACCATGATG CTTTACGCCT GCGTTGCAAC AATTCTGTTT TGGATAACCT TTGCCTCAAC CAAAGAGCGC GTGAGCCCAC CTGTTGGACA AAAAACCAAC CCCATCGACG ATATAAAAGA CCTGCTTAAA AACCGCGCAT GGGTAGTACT ATTCGCACTC GCGCTAATCA TAATGGTTAC CATTGTATTG CGCGGCAGCT CTGCACCTTA TTACTTCAAA TACTTTGTAG AGCGCCCAGA CCTTATGGGC AGCTTTATTG GTTTACAAAT GGCAGCCTAC GCTGTGGGCG CCTTGTCCTA CCCATTTCTA TTGCGTCGCA TAGGCGACAA AGCAAAACTG CTAACCATTT TGATGGCCAC GGTTGGTGTG CTTTGTATTG TTTTTGCCTT TATTCCAAAG CCCACCTCTA ACGGCGTAGT TACAATCACC CAAGACGAGG CAATTACCTT AGACGCTGCA GAATTACTGG GCGAAGCACA TAAAGATGGC GACAGCTACC AGTGGACATA CAACGAAAAA GTATTTTGGA TTATTAAAAA CCGCGTTGCC TACCCAGAAA CAGGCCCAAC ACTTAGCTTA GAAACCGCTA AGAGCGAAGC CATAAGCGTT ATAAAAACAA GTAAGGATGC GAATGGCGCT GTAACCGTTA TAGATAGCGC CAGCATGCCA ATCGAAATTT ATATTATGTT TATTTTGAAC ATTTTAATTA GCTTGGCGCT CGGCCCTAAA TCGCCGCTTA CTTGGTCTAT GCTGGCCGAT GCCGCAGATT ACAACGAGTG GAAAACTGGA CGCCGCGCCA CGGGCATGAC TTTCTCTGCC GCAAGCTTTT CGCAAAAAAT GGGCGGCATG GTAGGCAGCG TAGCAATCGG CGCAGTGCTC GCCTCGATTG GTTACACCGC CAACGAAGCG CAATCCGACG GCTCGCAAAC CGGTATTGTT ATTTTACAAA CCGCCGCCCC TGGTGTGTTT GCTTTTGTGG CCATTTTCGC ACTGCGTTTT TACAACTTAA CTGGCAACAA AATTGAGCAA ATACAAAAAG AGCTCGCCGA AAGATAA
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Protein sequence | MAQDRTGTIS LKEKIGYGFG DAASNFYWAI IGSYLVFFYT DIFGISAKSV AIMMVVTKLI DACTDPAIGA IADRTNTRWG KFRPYLLFGA LPMAGAAVLT MSTPDLGDTG KLVWAYITYT LMMLTYTILN LPYSSLAGVI TANTAERNSL FSIRFFCAYF TSIIVGAATP DLAAYFGQGD DAKGWQMTMM LYACVATILF WITFASTKER VSPPVGQKTN PIDDIKDLLK NRAWVVLFAL ALIIMVTIVL RGSSAPYYFK YFVERPDLMG SFIGLQMAAY AVGALSYPFL LRRIGDKAKL LTILMATVGV LCIVFAFIPK PTSNGVVTIT QDEAITLDAA ELLGEAHKDG DSYQWTYNEK VFWIIKNRVA YPETGPTLSL ETAKSEAISV IKTSKDANGA VTVIDSASMP IEIYIMFILN ILISLALGPK SPLTWSMLAD AADYNEWKTG RRATGMTFSA ASFSQKMGGM VGSVAIGAVL ASIGYTANEA QSDGSQTGIV ILQTAAPGVF AFVAIFALRF YNLTGNKIEQ IQKELAER
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