Gene Sde_0889 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0889 
Symbol 
ID3965486 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1148014 
End bp1150992 
Gene Length2979 bp 
Protein Length992 aa 
Translation table11 
GC content45% 
IMG OID637919951 
Productferrienterochelin/colicin outer membrane receptor 
Protein accessionYP_526363 
Protein GI90020536 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4771] Outer membrane receptor for ferrienterochelin and colicins 
TIGRFAM ID[TIGR01782] TonB-dependent receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000114339 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000138215 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGAATAACC TAAAGGTTAA GCCGCTGGCT CTTGCCATTG CTCTGGGCTT GTCTCCTTCG 
GCACTAGTTT ATGCGCAGTC CGATAGCTCG GCAGACGCGC AGCTAGAAGA AGTGATTGTG
ACCGGTGTTA AAGCCGCGGA TCTAAACGCC CGAGAAGCAG AGCGCAGTAA AGACGCGTTC
AGCTCGATTA TCTCTCAAGA TGACGCCGGC AACTTCGCCG ACCAAAACGT TGCAGAATCG
CTACAGCGTT TGCCCGGTAT TACCTTGCAA AAAAGTGAAG GTGAAGGGCG CTACGTAAAC
GTACGTGGTT TGGGGGCAGA TTTCGTATCG GTCACCATGA ACGGTTCTGA ATTGGCATCA
GGTGGTGGCG ACGGTCGCGC CTTTGCTCTG GATGCAATTC CAGCTGATAT GCTTGGCTCT
ATAGAGGTGT ATAAGTCTCT CACTCCAGAT CAAGATTTGA ACTCTATTGG CGGTACGGTA
AACGTTAAAA CAGTTTCAGC CTTCGATAAA AAACGTGACA CTCTTAAATT AAAAGCTCAA
GTTAATAACC AGGTGTACAA AGATCAGTTA TCGCCTAAGA TTTCTTTGTC TGGTACTAAT
TTATTGTTTG ATGATCGCAT AGGTATTGGC TATTCCGTGT CTACCGAGCA GCGGAACTCT
GTGAACTATG AAGTTCGTCA TCATTCGACT ACAGATGCAC GTTATATCAC AAATGGTAAT
ACCACAGCTT TGGTTCCTTA TCAGTTTGAG GCGAAGCAAG AGGAAGGGGA GCGTACTCGT
AATGCGGCCT CTTTAGATAT TGGTTTCCGC CCCACAAATA ACAGCGAATA CTATTTACGT
TTAAGCCACA CCTCATATCA AGATTTGGAC GTGGCACTAC GAGAGTACAG CCGTTTTGAT
ACATCCAGTG CAAGTGAATT TGTATTGCTG GATGTAGAAA ATAAGATCAT GGGTGCTGCT
GGCACCGAAC TACAGCATCA GTTCTTTATA CAGGATGGCG TAGCTACTAC AGACTCCGTA
GCTATTGGTG GTAAAAACAA TTTTGATAAT GGCTGGGAAA TAGAATACGA CCTGTCTGTA
TCCAAAGGAG AGTGGGATAA GCCCGGTGCT TCTCGTGTTC AATTTCGAGC GCGTGATATG
CCTATGATTG GTGGCTGGGG GCCAAATTAT CTTTGGAGTA TGCCAATTGA ACGTGACCAC
TTAGAGTATC TTGCTGGGGT GGATCAGGTG CTGAGTAACG CACCTTATAA CTATGGTTCT
CGTCAGCAAC CTGACATGGG TTTTGATAAC CTTTTTATCG AAGATAGTTT CCGTACTGAT
GATGTTAGTC AGCTTAAAAT TGACATCAAA AAAGAATTTG AAACCGGCAA GATTAATTAC
ATTAAATTTG GTGGCACGGT TAAAAATCGA GAGCGCGATC GAAACAAAGA TCGCTGGAGT
GTAATTCCTT CGGATAAGGC TTCTATCGGT TGTCCCGCGG CTGAAGATCC AGAGTTGTGT
TTTGATTTGG CGTCGTCTGA ATTAGGTGAT TTCGAAACAT TTGAGCCGGC CCATGCGGAC
ATCCGTCATA ACTTCATAAC TTACGATGAT GCTCGGTACC TTATCGACGC TACTAAAACG
GCGGCAACAG AGTTCGATAA GAACAATAAC GATCAAGATA GCGTTAAAGA CGATTATGTT
CTTACTGAAG ACGTACAAAA TATTTATTTA ATGGCGGAAT TTGCCACTTC AGATAACTCT
ACGTTAATCG TTGGTGGTAA ATACGAAACA ACTACGTTCG ACTCTACCGG AAACTTTTCT
ATACGTTGGG ATAGAAACGA AGATAGTTCG TCGGCGACTT CCGACGATAT TGTTGTGCCG
TTGACAAATA CCCAGACGAC ATACAGTGAC TTTCTGCCAA GTATTCACTG GAAGTATGAG
CCTCGCGACG ACTTGCTCGT GCGTGCTGCC CTTTGGACTA GTTTCACCCG TCCAAATTTC
TCAGATTCAC GTGCGTCAGT TGAATTTAGT GGTCGGGTAA TACTGTGCGA TGCTAATGCT
GTCGAAGAAA CTTCTTTGAC TTGTGATGAT CGCCCTACTG ACTTAAATAG TGCTTGGAGC
TCGGATGAGG CCGTTAAGGC AAACACTGTT ATAGGTAAGG CGAATACCTT AAAAATAGGT
AACCCGTCTT TGAAGGCTCA ATACGCCACA AACTTGGATA CCTCTTTAAC TTGGTATGCG
AGTGATGACC TGTACTTCCA GGCTGCATTA TTTGCCAAGC AAATTGATGG TTTTATTGCA
GAGGTTCGCG GGCAGGAAAT GAGCTTGGAA GATCTGCCGT TTTATGTTCC GGTTGAGACG
ATTAATGAAA GCTCTCCTGC GTTGAACTTA ATACCAGGAA AGGTTTATGA CGATGTAAAC
ATGAGCATTA ACGGCGAAGT GGCCCACGTT TATGGTCTTG AATTGACCTA CTCTCAATAC
TTCAATAGCG GTTTGTTTAT ACAGAGTAAC GCTACTTTTA TCGGTAGTAG TGCTGATGTA
GGTAGTACCG TTCGCGAAGA TAAAATTGCC TTGCCATTCC AAGCGGATGA GACCCTTAAC
CTAACGGTAG GTTGGGAGAA CGACGACGTT TCTGTACGTT TGATTGGCAA CTATCGCAGT
GCCGTACTTG AGCAAATAGG TAGTTGTACC GCTGCCAATA AAGCTCAAGA TATCGCTGAT
GCTGCTGCAC GAGCTGAGGC TGGTGGTAAT GGTGCAATCA TTCCTGAAAG TTGTAAAAAG
TGGGCCGACG TTTACGAAGA CAACACCTTT GGTTTGGACT TTAAGGCAAC GTGGAAAGTC
ACCGATATGA TTGGCGTCTA TTTTGATGCG CTAAACCTAA CTGGTGATCG TTCAGTTCGC
TACTACACGG GAAATGAATA CAGCAATGGG AAAATGATGT ACAGCGGTGA AGATTTTGGT
ACCTCATTCC AGTTGGGCGT TAACGTGAAA ATTATGTAA
 
Protein sequence
MNNLKVKPLA LAIALGLSPS ALVYAQSDSS ADAQLEEVIV TGVKAADLNA REAERSKDAF 
SSIISQDDAG NFADQNVAES LQRLPGITLQ KSEGEGRYVN VRGLGADFVS VTMNGSELAS
GGGDGRAFAL DAIPADMLGS IEVYKSLTPD QDLNSIGGTV NVKTVSAFDK KRDTLKLKAQ
VNNQVYKDQL SPKISLSGTN LLFDDRIGIG YSVSTEQRNS VNYEVRHHST TDARYITNGN
TTALVPYQFE AKQEEGERTR NAASLDIGFR PTNNSEYYLR LSHTSYQDLD VALREYSRFD
TSSASEFVLL DVENKIMGAA GTELQHQFFI QDGVATTDSV AIGGKNNFDN GWEIEYDLSV
SKGEWDKPGA SRVQFRARDM PMIGGWGPNY LWSMPIERDH LEYLAGVDQV LSNAPYNYGS
RQQPDMGFDN LFIEDSFRTD DVSQLKIDIK KEFETGKINY IKFGGTVKNR ERDRNKDRWS
VIPSDKASIG CPAAEDPELC FDLASSELGD FETFEPAHAD IRHNFITYDD ARYLIDATKT
AATEFDKNNN DQDSVKDDYV LTEDVQNIYL MAEFATSDNS TLIVGGKYET TTFDSTGNFS
IRWDRNEDSS SATSDDIVVP LTNTQTTYSD FLPSIHWKYE PRDDLLVRAA LWTSFTRPNF
SDSRASVEFS GRVILCDANA VEETSLTCDD RPTDLNSAWS SDEAVKANTV IGKANTLKIG
NPSLKAQYAT NLDTSLTWYA SDDLYFQAAL FAKQIDGFIA EVRGQEMSLE DLPFYVPVET
INESSPALNL IPGKVYDDVN MSINGEVAHV YGLELTYSQY FNSGLFIQSN ATFIGSSADV
GSTVREDKIA LPFQADETLN LTVGWENDDV SVRLIGNYRS AVLEQIGSCT AANKAQDIAD
AAARAEAGGN GAIIPESCKK WADVYEDNTF GLDFKATWKV TDMIGVYFDA LNLTGDRSVR
YYTGNEYSNG KMMYSGEDFG TSFQLGVNVK IM