| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0766 |
|---|
| Symbol | |
|---|
| ID | 3966210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 989835 |
|---|
| End bp | 990782 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637919828 |
|---|
| Product | putative LACI-type transcriptional regulator |
|---|
| Protein accession | YP_526240 |
|---|
| Protein GI | 90020413 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.0284557 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.148225 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATT CTACAAAAGG CCTAGCCCTT TGCGCACTAC TCAGTGTTAC TGGCGCGGCA
CAAGCGCTAA CCGTGGGTTT TTCTCAGGTA GGCTCCGAAA GTGGCTGGCG CACAACATTT
TCTGAGTCTG TGAAAGCCGA AGCCGAACGG CGCGGCATAG ACCTCAAGTT CTCCGACGCC
CAACAAAAAC AAGAAAACCA AATTAAAGCA ATTCGCAGTT TTATAGCCCA AGGCGTAGAT
GCCATTGTAG TTGCGCCCGT AGTAGAAACA GGTTGGAAGC CTGTATTTAT GGAAGCTAAA
CGCGCGCGTA TTCCTATTGT AATTGTGGAT CGCAATGTCG ATTTAAAAAA TGATTCGCTT
TATGTCACCC GTATTGCGCC AGATTTTACC GAAGAAGGTA AAAAGGCCGC GAACTGGCTT
ATGAATGCAA CAGCGGGCAA ATGCAATATC GTCGAACTAC AAGGTACCGT TGGGTCTAGT
GCAGCCATTG GTCGCATGGA AGGCTTTAAC AGTGTTATTG CCAATTACCC CGAGGCAAAA
ATAGTGCGCA GTCAAACTGC TGAATTTACT CGCGCTAAGG GTAAAGAGGT AATGGAAAGT
ATTCTAAAAG CCGAAGGTGG CGGTGAGTCT ATATGCGCAC TGTGGTCGCA CAACGATGAA
ATGGCGCTAG GTGCCATTCA GGCCATTAAA GAAGCGGGTT TAAAGCCGGG TAAAGATATT
CATGTGGTAT CTGTGGATGC GGTTGACGAT ATTTTCAAAG CGCTTGCGGC TGGCGAAGTA
AGCGCAACCG TAGAAATGAG CCCCCATATG GGCGGCCCAG CATTCGACGT TATAGAAGAG
TACTTAAAAA CCAAAAAGAA ATTCGATAAA TGGATAGTGA TGGATGGCAA AGTGTTCACC
ACAGAAAACT ATCAACAAGA ATACAAAGCT CGGTTTGTTA ATCAGTAA
|
|---|
| Protein sequence | MNNSTKGLAL CALLSVTGAA QALTVGFSQV GSESGWRTTF SESVKAEAER RGIDLKFSDA
QQKQENQIKA IRSFIAQGVD AIVVAPVVET GWKPVFMEAK RARIPIVIVD RNVDLKNDSL
YVTRIAPDFT EEGKKAANWL MNATAGKCNI VELQGTVGSS AAIGRMEGFN SVIANYPEAK
IVRSQTAEFT RAKGKEVMES ILKAEGGGES ICALWSHNDE MALGAIQAIK EAGLKPGKDI
HVVSVDAVDD IFKALAAGEV SATVEMSPHM GGPAFDVIEE YLKTKKKFDK WIVMDGKVFT
TENYQQEYKA RFVNQ
|
|---|
| |