| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0678 |
|---|
| Symbol | |
|---|
| ID | 3964929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 863183 |
|---|
| End bp | 863767 |
|---|
| Gene Length | 585 bp |
|---|
| Protein Length | 194 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637919739 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526152 |
|---|
| Protein GI | 90020325 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1225] Peroxiredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.182465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.0000000142494 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTTAA CCGAATCCAC TATGATGGCG CTGGGCAGCC CAGCCCCAAG CTTTTCGCTG
CCTTCTACCG ATGGCGAGCA AGTAACCTTG GCTAACTTTG AAGGTAAAGC GGGCTTGGTT
GTGATGTTTA TTTGTAATCA CTGCCCGTAT GTTATTCATA TAGCGCCTGC GCTAGCCAAA
CTGGCGGCCG AGTACCAACA AAAAAATATT GGTTTTGTGG CTATTAGCAG TAACGATGCG
TCTACGTACC CAGCAGATAG CTTCGAATTA ATGAAAGAGG AAAAAGCCAA GCAGGGCTAC
ACCTTTGCTT ACCTTTACGA CGAAAGCCAA GCGGTAGCGA AAGCCTACAA TGCCGCCTGC
ACGCCAGATA TTTACTTGTT CGATAAAGAG CAGAAACTTG TTTACCGCGG CCAATTTGAC
GATACGCGTC CACACCGTAT TTCTTCTGGC AATTACGACT CCTCTGCAGC GCCCGCAACC
GGTGCCGACC TAAAAGCCGC ACTCGATTTA CTGCTGGCAG GGCAAGCTAT ACCTACCAAA
CAATACCCTT CTATTGGCTG CAACATTAAG TGGAAGGACT CGTAG
|
|---|
| Protein sequence | MALTESTMMA LGSPAPSFSL PSTDGEQVTL ANFEGKAGLV VMFICNHCPY VIHIAPALAK
LAAEYQQKNI GFVAISSNDA STYPADSFEL MKEEKAKQGY TFAYLYDESQ AVAKAYNAAC
TPDIYLFDKE QKLVYRGQFD DTRPHRISSG NYDSSAAPAT GADLKAALDL LLAGQAIPTK
QYPSIGCNIK WKDS
|
|---|
| |