Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0664 |
Symbol | |
ID | 3967638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 845224 |
End bp | 846147 |
Gene Length | 924 bp |
Protein Length | 307 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637919725 |
Product | response regulator receiver modulated diguanylate cyclase |
Protein accession | YP_526138 |
Protein GI | 90020311 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00416303 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAACTAA AAAGTATTAC AGTGTACCTT GTGGAAGACG ATCCAGATGA TCAATACCTC CTCAAGTTGA TGCTGCAAAA GGACCCGCAG TTTGAATACC GAGTGCACTG TTTTGCTAGG TTAAATGAAT GCTTGGCCTC CAGTGATGAA GAAACACCAG ATTTAATCCT ACTCGACCTT ATACTACCCG ACAGTACAGG CGAGGAAACG TTGGTGACTG TGCTAGACAA TTACCGCCAT ACCCCAGTGA TAGTATTAAC GGGGGTCGAC ATGGGCGATA TTGGTGAGCG CGCAGTTGGC ATAGGAGCAC AAGACTACCT GCGTAAAAAT GAATTAAGCC AAACGGCCTT GGGGCAATCC ATTCGTTACG CGTTAGAGCG CCACTCTTTA GTAAAAGAGT TACACCACAG AGCAATCACC GATTACCTTA CCGGTTTATT AAATCGCTCT GCGTTTATAG AGCGTTTAGA TCACGAGCTG GCGCATGCCG AGCGTTACAA ACATATGTTT GCTGTAGCAA GTATCGATTT AGATAATTTT AAACAGGTGA ATGATACGCT GGGTCACGGT GTTGGCGACA AGGTGCTTAT CGAGTTTGGA CAAATACTTG AAAAATGCAC CCGTCGTAGC GACACGCCGG CGAGGTTTGG TGGCGATGAA TTCGTTGTGT TACTTACTCG TTTAGAGTCA GTTGACGATG CTTTAGATAT TGTTGCTAAA AAGCATCAAG AGCTAATTGC AGCTCTTGAT GAATATGTGA TTAGTCAGGT GGGTGACAAA GTGGATTTGG GATTAAGTAT TGGTGTGGCT GTTTACCCCA GTGATGGCAC GAGTGTAGAT CAATTACTTA TTGCTGCAGA CAAAGCATTA TATAAAAGTA AGCGAGCAGG CAAAAATACC TTTTATCTTA CTGGTAAGGC GTAA
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Protein sequence | MELKSITVYL VEDDPDDQYL LKLMLQKDPQ FEYRVHCFAR LNECLASSDE ETPDLILLDL ILPDSTGEET LVTVLDNYRH TPVIVLTGVD MGDIGERAVG IGAQDYLRKN ELSQTALGQS IRYALERHSL VKELHHRAIT DYLTGLLNRS AFIERLDHEL AHAERYKHMF AVASIDLDNF KQVNDTLGHG VGDKVLIEFG QILEKCTRRS DTPARFGGDE FVVLLTRLES VDDALDIVAK KHQELIAALD EYVISQVGDK VDLGLSIGVA VYPSDGTSVD QLLIAADKAL YKSKRAGKNT FYLTGKA
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