| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0661 |
|---|
| Symbol | |
|---|
| ID | 3967635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 839940 |
|---|
| End bp | 841547 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637919722 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_526135 |
|---|
| Protein GI | 90020308 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0281] Malic enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.245423 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCA AGGTTCACGA ACTACTCAAT AACGCGCGCC TCAATAAGGG GACAGCTTTC
ACACTTGAAG AAAGAGAAGA ACTTGGGCTT AGTGGCCTAC TTCCACCACA TGTAAGCACA
ATGAAGGAGC AGGTAGAACG CGCATTATCG AGTATTCGGC GCAAAGAATC TGATATAGAC
CGCTATATAT TTTTATCTGC ACTCCAAAAG CGCAACGAAA GATTGTATTA CCGCCTACTT
ATCGATCATA CCAAAGAGCT TATGCCATTG GTGTACACCC CCACGGTTGG TCAAGCCTGT
CTCGAATTTG CCAGTATTTT TCGTGAAACC AGCGGGTTTT ATCTTTCCTA TGCAGACAAA
GGCTTAATAC AAAAGCGCTT GGCCAATTGG CCAGAGCAAG ATGTAAGGCT TATTGTGGTA
ACCGATGGCG AACGCATATT AGGCTTGGGC GATTTAGGCG CAAACGGCAT GGGTATTCCT
ATAGGTAAAC TCGCCCTTTA TTGCGCCTGC GCTGGGGTAA AGCCCGAGCA GTGCCTACCT
ATTATGCTAG ACCTTGGCAC CAACAACGAA AGCATTCGCA ACGATCCACT CTATTTAGGT
GTACCCGAGC CAAGAAAACG CGGTAGCGAA TATGACGACT TTTTAGAAGA GTTTGTGCGC
GCGGTTGAAA AGCAATTCCC CAATGCGCTG CTGCAATTTG AAGATTTTGC CACCGGCAAT
GCCGTAAACT TGTTGGAAAA ATATCGCGAT CAGCTACTGT GCTTTAATGA CGATATTCAA
GGCACCGCTT CTGTTGTGCT TGCAGGCCTA ATGGCTACAA CTCGCATTTC TAAAATACCC
TTGCAAGAAC AGCGCTTCTT ATTTTTAGGG GCCGGCTCGG CTGCAACCGG TATTGGCCAC
CTGCTTACCA CGGCATTAGA GCGCGAAGGT ATAACCACCG ACGAAGCGCG CGCGCGCCTA
TTTTTTATAG ACCGCAAAGG CTTAGTTACC CAATGTCGCG ATGATCTACC CGGCCATGTG
GCACCTTTTG CTGCCAACAT GCCGCCCATG GACCTAAAGC AAGCAATCGA TACAATAAAA
CCCAACGCCC TGATCGGCGC CTCGGGTACC GCTGGCGTGT TTACAGAAGA GATTATTCAC
ACTGTTGCAA GCTGCCACAG AAACCCTACA ATTTTTGCGC TTTCCAACCC CACATCAAAG
GCCGAATGCA CAGCGGAAGA TGCTTATAAG TTTTCCGATG GCCGCGCAAT TTTTGCAAGT
GGTAGCCCGT TTGATGTGGT ACATATAAAT GGTGAAATTA AAGTGCCAGG GCAAGGCAAT
AACGCCTATA TTTTTCCCGG TTTAGGCTTG GGCGCTATTC ACGGTAAAAT TACGCGTATT
ACCGACGACC AACTTATTAC TGCCGCGCAA GAATTAGCTG GCAGCGTTTC CGACAAGCAG
ATCCAACACG GCTGCTTGTA CCCTCCTTTA GATGAGATTA GAAACGTGTC GGTAAAAATT
GCTGCAGCGG TTGCCCGCGA TGCAGAACGC ACAGGCTTAA CATCTGAACC CGTGCCGGAA
AATTTCGAGG AATTATTAAC TGCAGAGCTT TACGACCCGC TTTACTAA
|
|---|
| Protein sequence | MTLKVHELLN NARLNKGTAF TLEEREELGL SGLLPPHVST MKEQVERALS SIRRKESDID
RYIFLSALQK RNERLYYRLL IDHTKELMPL VYTPTVGQAC LEFASIFRET SGFYLSYADK
GLIQKRLANW PEQDVRLIVV TDGERILGLG DLGANGMGIP IGKLALYCAC AGVKPEQCLP
IMLDLGTNNE SIRNDPLYLG VPEPRKRGSE YDDFLEEFVR AVEKQFPNAL LQFEDFATGN
AVNLLEKYRD QLLCFNDDIQ GTASVVLAGL MATTRISKIP LQEQRFLFLG AGSAATGIGH
LLTTALEREG ITTDEARARL FFIDRKGLVT QCRDDLPGHV APFAANMPPM DLKQAIDTIK
PNALIGASGT AGVFTEEIIH TVASCHRNPT IFALSNPTSK AECTAEDAYK FSDGRAIFAS
GSPFDVVHIN GEIKVPGQGN NAYIFPGLGL GAIHGKITRI TDDQLITAAQ ELAGSVSDKQ
IQHGCLYPPL DEIRNVSVKI AAAVARDAER TGLTSEPVPE NFEELLTAEL YDPLY
|
|---|
| |