| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0660 |
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| Symbol | |
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| ID | 3967634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 837361 |
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| End bp | 839928 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637919721 |
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| Product | triosephosphate isomerase |
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| Protein accession | YP_526134 |
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| Protein GI | 90020307 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.146295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.430241 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTAAAAG CTGTGGTTGG AGCGGGCTTG GGTGAACAGC CCGTGGATAT TGCTGTACTT
AGCCAAGCCG GCGACGTTGT ATTTGTAAGC AAAGGCTGGC TTGCAGGCTT GCCCCTATTC
AGCGATCAGG CAAGTGCGGT AGGTGAGCTA AAAGCACCTA AAATTGACTG GGTTGGCAAT
AACTTTTTCG CACTGTGTCG TGAGTTTATT GGCCCAAGTG TACAGTGGGT GGCGAAATCT
TTTGGTGCGC AAGAAAATAG CTTAACCGAT CACATCGAGG CGATGCTCGA ATTGGTATTA
AATGGCGCAG ATACGCAGCA TTGTTTTTAC GCAATTGAAA AAAACGGCGT GCTTCAACAT
TATGAGCTTA CCGCAGAGGC CTGCAGTAAT ACGGCGCTGG GGGCGGTTAT CCGCCATCGA
GCTCGGTCTA ATTCAATTTT CCTGGCTGCG GGTATACCGC TAGATAGCAA CTTCTACGAA
GCGTTGTTCA ACAATCTAGT AGACGGCATT ATTTATCAAA ACCTAGAGGG TTATATAGAG
CTGGCGAATG AGGCCGCCCA AGAAATACTC GATTTTAAAT TCGAAGGGAA TAATCCCGAT
GAGCCAAATA AACAGTCGTT ATTATCCGAT TACTGGACGT TTTTAAATGA AGATGGCCAG
AAGCTTTCAC TTGCGGATAA CCCCATTCTG CGCGTGCTAA CAAAAGGCGC GGGGCTGCAA
AACCTCACTT TGGGGGTGGT GCGCCCAGAT AAAGAGTTGG TGTGGCTAAA ACTAAACGTT
GCCATTATTA ATAGCCCCGA TACCAATATT CCCCACGGTG TGCTCATTTC TTTTGTGAAT
ATTACTGCAG AGACGGAAGC GCATACCGCA TTAGAGAAGG CTTCAGAACG TTTGCGTTTG
GCGCTAGATG GGGCGTCGAT TGGTATTTGG GATTGGTATA TCTCCGACGC AGAAATGATT
TGGGATGACC AAATGTACCG CCTTTATGGC ATGGAGCCAC GTCAGTACAT ATCTGTAAGA
GAGGCGTGGG AGCATGTAGC CCACCCCGAT GATAACCAGC GCGTGCTGGA CGAGCTTGGT
GAGTTACTTA AAACCAAGAA AGATACTATA AGCGAATTCC GCGTATTATT GCCCGATAAA
TCTATTCGTC ACCTGCGCGC CTATGCGCGT GCAGTGCTGG ACGAAGACGG CCTCGTGCAG
CGGGTAGTTG GGATGAACTG GGATGTAACC AAAGAAGTGG AGGCCGAAGA GCGCTTGGCG
CATATTGCCT TTACTGATGA GCTTACCTCA CTGCCTAACC GGTTAGCGTT TAGCAAAAAA
CTAAAAAACA CCATGAAGCT TGCCGAGAAA TACCACGGCA AGGTGGCAAT GTTAATTGTA
GATTTAGATC ACTTTAAAGA TATTAATGAT AGTTACGGTC ACCCAGTGGG CGACTCACTA
ATTTGTGAAG TTGTTACGCG TTTAAAAGAA GTGCTTGTGG GTGATGAGTA TTTGGCGCGC
ATTGGTGGCG ATGAATTTGC GCTTATTTTA GATAACGTAC GTTCACATGA TGCCGCCTTG
CATTATAGCC GGCGCATTCA GAAAATAATG GCCGAGCCTA TTTATCTAAT GGAAGGGCCT
GTCGTTAATG CGCGGGTTTC CATGGGGGTG GCACTGTTCC CCGATGACGG TGAGGATGCA
GTTGCCCTTA TTAAAGCTGC AGATCTGGCC ATGCATCAGG CCAAAAAAAG TGGTCGCAAT
ACGGTATTGC CATACAAGCA AGAGTACTCT TCGTCGTTAG AGAAAAAAAT ATTCTTGGAA
GAAGAGCTGC GCTCTGCCAT TCGCGACGAA GAATTAATGC TGTATTACCA GCCCATTATT
GATTTAAGCA CAGAAAAAAT CGTGGGCTGT GAAGCTTTGT TGCGCTGGAT AGATCGCGCA
GGCAAGTTCG TCTCGCCGGT AGATTTTATT CCCGTTGCCG AAGAGAGCGG CCTAATTTAC
GAATTGGGCA ACTGGATTAA TGCCACCGCC TTTAAACAGC TCAAGCTATG GCAAACCTTG
CATACCGATA TGAAATACAT TTCGGTGAAT GTTTCGCCTC ACCAGTTGCA AAACGCAGAC
TTTGTAAAAG ATATTCAGCG CTTACTCGAT ATACACAATG TTGATCCACG CCATATTCAG
CTAGAAATTA CCGAGGGAAC GTTTTTACAA GAGTCGCTAA ATACCCAAAG CCAATTGCGC
ATACTTGGCG AGATGGGTTT TAGGTTGGCT ATTGATGATT TTGGTACGGG TTATTCGTCG
CTAGCGTATT TAAAACGCTT TGCGGTAGAT GTAATTAAAA TTGATCGCAG CTTTGTTATG
GATTTAGAAG ACGACCCTGC CGATAGAGAT ATTGTAAAAG CGATTATTGC AATGACTACA
AGCTTAGGGT TCGATACGCT AGTTGAAGGC GTAGAAACCC GAGAGCAATC GCTAATAGTG
GGGGCGCTTG GGTGTGGCTA CGGGCAGGGT TACCTGTACG GTAAGCCCAC CTTTGCCGAT
GATTACGCCG AGCAATATAT AGGGTTAAAG TCTGTCGCAA ACCGCTAA
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| Protein sequence | MVKAVVGAGL GEQPVDIAVL SQAGDVVFVS KGWLAGLPLF SDQASAVGEL KAPKIDWVGN
NFFALCREFI GPSVQWVAKS FGAQENSLTD HIEAMLELVL NGADTQHCFY AIEKNGVLQH
YELTAEACSN TALGAVIRHR ARSNSIFLAA GIPLDSNFYE ALFNNLVDGI IYQNLEGYIE
LANEAAQEIL DFKFEGNNPD EPNKQSLLSD YWTFLNEDGQ KLSLADNPIL RVLTKGAGLQ
NLTLGVVRPD KELVWLKLNV AIINSPDTNI PHGVLISFVN ITAETEAHTA LEKASERLRL
ALDGASIGIW DWYISDAEMI WDDQMYRLYG MEPRQYISVR EAWEHVAHPD DNQRVLDELG
ELLKTKKDTI SEFRVLLPDK SIRHLRAYAR AVLDEDGLVQ RVVGMNWDVT KEVEAEERLA
HIAFTDELTS LPNRLAFSKK LKNTMKLAEK YHGKVAMLIV DLDHFKDIND SYGHPVGDSL
ICEVVTRLKE VLVGDEYLAR IGGDEFALIL DNVRSHDAAL HYSRRIQKIM AEPIYLMEGP
VVNARVSMGV ALFPDDGEDA VALIKAADLA MHQAKKSGRN TVLPYKQEYS SSLEKKIFLE
EELRSAIRDE ELMLYYQPII DLSTEKIVGC EALLRWIDRA GKFVSPVDFI PVAEESGLIY
ELGNWINATA FKQLKLWQTL HTDMKYISVN VSPHQLQNAD FVKDIQRLLD IHNVDPRHIQ
LEITEGTFLQ ESLNTQSQLR ILGEMGFRLA IDDFGTGYSS LAYLKRFAVD VIKIDRSFVM
DLEDDPADRD IVKAIIAMTT SLGFDTLVEG VETREQSLIV GALGCGYGQG YLYGKPTFAD
DYAEQYIGLK SVANR
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